Table 3. Association of multi-functional proteins with different dockerin groups in R. flavefaciens FD-1.
Protein modulesa | Dockerin group | Expression fold changeb | ORF |
SIGN-GH11-CBM22-GH10-Doc-GH11 | 1a | 4.74 | ORF00468 |
SIGN-UNK-PL1-UNK-PL9-UNK(CBM)-Doc | 1a | 1.88 | ORF00696 |
SIGN-GH11-CBM13-CE1-Doc | 1a | 9.79 | ORF00775 |
SIGN-GH11-CBM22-GH10-Doc-CBM22-CE4 | 1a | 63.01 | ORF01222 |
SIGN-GH11-CBM22-Doc-GH11-CE3 | 1a | 25.32 | ORF01315 |
SIGN-UNK-CE12-CBM13-Doc-CBM35-CE12 | 1a | 4.01 | ORF02983 |
SIGN-UNK-CE12-CBM13-Doc-CBM35-CE12 | 1a | 7.32 | ORF03219 |
SIGN-Doc-GH16-GH16-GH16 | 1b | 2.21 | ORF00265 |
SIGN-GH5-CBM(EndA)-GH5-Doc | 1b | 4.97 | ORF01388 |
SIGN-CE8-UNK-PL1-UNK-Doc | 1b | 1.44 | ORF02371 |
SIGN-GH43-X19-CBM22-Doc-CE1 | 3 | 2.42 | ORF00341 |
SIGN-GH43-CBM6-CBM22-Doc-CE1 | 3 | 4.12 | ORF00764 |
SIGN-GH53-CE3-Doc | 3 | 1.07 | ORF01739 |
SIGN-CE3-CBM22-Doc-CE15 | 3 | 8.56 | ORF02390 |
SIGN-PL11-Doc-CBM35-CE12 | 3 | 1.66 | ORF03451 |
UNK-CBM22-GH10-CBM22-Doc-GH43-CBM6 | 3 | 8.81 | ORF03865 |
SIGN-CBM35-Esterase/Lipase-Doc-CBM35-GH26 | 6a | 0.74 | ORF03447 |
SIGN-GH11-CBM22-GH10-Doc-GH11-CE4 | Unclassified | 50.1 | ORF03896 |
Abbreviations: sign, signal peptide; GH, glycoside hydrolase; CBM, carbohydrate-binding module; Doc, dockerin; unk, unknown; PL, polysaccharide lyases; CE, carbohydrate esterases; LRR, leucine-rich repeat.
Expression data was based on Berg Miller et al [24].