Table 3. Comparison of various in silico genome-scale models with iAI549.
In silico models (Organisms) | iAI549 (Dehalococcoides) | iRM588 (G. sulfurreducens) | iAF692 (M. barkeri) | iAF1260 (E. coli) | iYO844 (B. subtilis) |
Total reactions | 518 | 522 | 619 | 2077 | 1020 |
Amino acid metabolism | 139 | 119 | 150 | 198 | 207 |
Cofactor and prosthetic group biosynthesis | 102 | 100 | 153 | 162 | 83 |
Nucleotide metabolism | 83 | 58 | 75 | 155 | 123 |
Lipid metabolism | 81 | 93 | 46 | 522 | 126 |
Central carbon metabolism | 41 | 64 | 72 | 252 | 196 |
Energy metabolism | 40 | 37 | 41 | 90 | 41 |
Transport | 32 | 51 | 82 | 698 | 244 |