Table 1.
Phylogenetic profile of the Tammar wallaby metagenome sequence dataset, based on sequence composition-based binning using Phylopythia
Taxonomic group | # Fragments | %* | #bp | %* |
Bacteria | 9,648 | 76 | 19,776,692 | 86 |
Actinobacteria | 110 | 1 | 169,998 | 1 |
Bacteroidetes | 1,046 | 8 | 2,161,259 | 9 |
Bacteroidales | 715 | 6 | 1,668,287 | 7 |
Cyanobacteria | 14 | <1 | 25,871 | <1 |
Firmicutes | 3,714 | 29 | 9,171,159 | 39 |
Bacilli | 41 | <1 | 75,915 | <1 |
Clostridia | 2,757 | 22 | 7,110,958 | 30 |
Lachnospiraceae | 1,860 | 17 | 5,681,224 | 24 |
Uncultured Lachnospiraceae bacterium (WG-2) | 482 | 4 | 2,266,276 | 10 |
Erysipelotrichi | 700 | 5 | 1,651,819 | 7 |
Erysipelotrichaceae | 694 | 5 | 1,638,325 | 7 |
Uncultured Erysipelotrichaceae bacterium (WG-3) | 355 | 3 | 881,678 | 4 |
Fusobacteria | 17 | <1 | 21,277 | <1 |
Proteobacteria | 854 | 7 | 2,890,009 | 12 |
Gammaproteobacteria | 450 | 4 | 2,180,396 | 9 |
Aeromonadales | 425 | 3 | 2,120,188 | 8 |
Uncultured bacterium (WG-1) | 366 | 3 | 1,995,748 | 8 |
Spirochaetes | 34 | <1 | 60,615 | <1 |
Tenericutes | 111 | 1 | 163,215 | 1 |
Archaea | 752 | 6 | 970,797 | 4 |
Euryarchaeota | 325 | 3 | 431,247 | 2 |
Eukaryota | 77 | <1 | 133,072 | 1 |
Other | 135 | 1 | 162,443 | 1 |
Unclassified | 2,187 | 17 | 1,709,141 | 7 |
TOTAL | 12,664 | 22,961,806 |
*Percentages are given at different taxonomic levels, therefore add up to more than 100%; data in shaded rows assigned to the sample-specific classes for the WG-1 (uncultured γ-Proteobacteria bacterium), WG-2 (uncultured Lachnospiraceae bacterium) and WG-3 (uncultured Erysipelotrichaceae bacterium) clades of the model; all other assignments are to classes trained from publicly available data.