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. 2010 Jul 28;107(33):14793–14798. doi: 10.1073/pnas.1005297107

Table 1.

Phylogenetic profile of the Tammar wallaby metagenome sequence dataset, based on sequence composition-based binning using Phylopythia

Taxonomic group # Fragments %* #bp %*
Bacteria 9,648 76 19,776,692 86
 Actinobacteria 110 1 169,998 1
 Bacteroidetes 1,046 8 2,161,259 9
  Bacteroidales 715 6 1,668,287 7
 Cyanobacteria 14 <1 25,871 <1
 Firmicutes 3,714 29 9,171,159 39
  Bacilli 41 <1 75,915 <1
  Clostridia 2,757 22 7,110,958 30
   Lachnospiraceae 1,860 17 5,681,224 24
Uncultured Lachnospiraceae bacterium (WG-2) 482 4 2,266,276 10
  Erysipelotrichi 700 5 1,651,819 7
   Erysipelotrichaceae 694 5 1,638,325 7
Uncultured Erysipelotrichaceae bacterium (WG-3) 355 3 881,678 4
 Fusobacteria 17 <1 21,277 <1
 Proteobacteria 854 7 2,890,009 12
  Gammaproteobacteria 450 4 2,180,396 9
   Aeromonadales 425 3 2,120,188 8
Uncultured bacterium (WG-1) 366 3 1,995,748 8
 Spirochaetes 34 <1 60,615 <1
 Tenericutes 111 1 163,215 1
Archaea 752 6 970,797 4
 Euryarchaeota 325 3 431,247 2
Eukaryota 77 <1 133,072 1
Other 135 1 162,443 1
Unclassified 2,187 17 1,709,141 7
TOTAL 12,664 22,961,806

*Percentages are given at different taxonomic levels, therefore add up to more than 100%; data in shaded rows assigned to the sample-specific classes for the WG-1 (uncultured γ-Proteobacteria bacterium), WG-2 (uncultured Lachnospiraceae bacterium) and WG-3 (uncultured Erysipelotrichaceae bacterium) clades of the model; all other assignments are to classes trained from publicly available data.