Table 5.
Differentially expressed genes
| Entrez ID | Probe name | Gene name | Encoded protein | Log2-fold difference | Adjusted p-value (false discovery rate) |
|---|---|---|---|---|---|
| 50487 | A_23_P17814 | PLA2G3 | Phospholipase A2, group III | -3.1 | 1.1E-12 |
| 81579 | A_23_P30020 | PLA2G12A | Phospholipase A2, group XII A | -1.6 | 2.5E-9 |
| 56994 | A_23_P105571 | CHPT1 | Choline phosphotransferase 1 | -1.4 | 1.6E-7 |
| 23446 | A_23_P216630 | SLC44A1 | Solute carrier family 44, member 1 (CTL1) | -1.1 | 7.9E-7 |
| 5338 | A_23_P4308 | PLD2 | Phospholipase D2 | -1.1 | 1.2E-6 |
| 8399 | A_23_P88767 | PLA2G10 | Phospholipase A2, group X | -1.1 | 3.1E-6 |
| 1119 | A_23_P314120 | CHKB | Choline kinase beta | -0.8 | 2.0E-6 |
| 11313 | A_24_P276490 | LYPLA2 | Lysophospholipase II | -0.4 | 0.005 |
| 5130 | A_23_P252681 | PCYT1A | Phosphate cytidylyltransferase 1, choline, alpha | -0.4 | 0.035 |
| 24657 | A_23_P84666 | GDPD1 | Glycerophosphodiester phosphodiesterase domain containing I | -0.4 | 0.005 |
| 1119 | A_23_P124742 | CHKA | Choline kinase, alpha | -0.3 | 0.047 |
Genes directly involved in choline metabolism with significantly lower expression in basal-like (MAS98.12) than luminal-like (MAS98.06) tumors