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. 2010 Sep;26(9):1033–1045. doi: 10.1089/aid.2009.0197

FIG. 7.

FIG. 7.

Subtype identities of 02CMLT72 segment II (nt 2666–5452). Similarity plots were created using SimPlot 3.5.1 software configured with Window size, 200 nt; Step, 20 nt; GapStrip, On; F84 (maximum likelihood). Breakpoints are indicated at the top of the plot. There are five blocks (block a, nt 2666–3891; b, nt 3892–4002; c, nt 4003–4829; d, nt 4830–5105; and e, nt 5106–5452). Reference sequences of the subsubtypes A1, A2, B, C, D, F1, F2, G, H, J, and K, as well as of CRF22_01A1 and CRF01_AE are listed on the right side; red, CRF22_01A1; blue, CRF01_AE; black, subtype A1. (Color image can be found at www.liebertonline.com).