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Reanalysis of the 01CM53122 genome. Bootscan plots were performed as described in Fig. 3; breakpoints are indicated. (A) Bootscanning analysis of 01CM53122 queried against CRF22_01A1 reference strains including 02CMLT72, 02CM1867LE, 02CM3097MN, 01CM001BBY, and 02CM1917LE. (B) The segment was analyzed by neighbor-joining representative trees and is illustrated for the region nt 6700–7146 (HXB2 numbering) in 01CM53122. (Color image can be found at www.liebertonline.com).
