Table 1.
Phylogenetic Prediction of CRF22_01A1 Recombinant Segments
| Segment no. | HIV-1 gene | Location in HXB2 | Nearest strain | Bootstrap value (%) | SUDI distance (closest strain) |
|---|---|---|---|---|---|
| I | gag, pol | 791–2665 | 01_AE | 100 | Intrasubtype (01_AE) |
| II | pol, vif | 2666–5452 | A1a | 100 | Intersubsubtype (A1) |
| III | vif, vpr, env | 5453–6723 | 01_AE | 100 | Intrasubtype (01_AE) |
| IV | env | 6724–8470 | A1 | 97 | Intrasubtype (A1) |
| V | env, nef | 8471–9431 | 01_AE | 100 | Intrasubtype (01_AE) |
a
Relatedness to specific lineage in the subtype radiation was determined by Mage 4, RIP, and jpHMM software.