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. 2010 Sep 8;99(5):1628–1636. doi: 10.1016/j.bpj.2010.06.040

Figure 3.

Figure 3

Selected properties from the successful quench simulation. (a) Cα RMSD of the core residues (residues 8–53) to the minimized crystal structure; N = 698,699. (b) DSSP showing the secondary structure for each residue over time: α-helix (blue), π-helix (cyan), and 3/10-helix (magenta), N = 68,970. (c) HI-HII contacts, N = 273,759. (d) HIII-core contacts, N = 229,394. For c and d, a cross (+) was plotted at each time point when the two residues were in contact. The color version of the figure can be viewed online.