Table 1.
Data collection and refinement statistics
I∗ | Br∗ | Cl∗ | F∗ | |
---|---|---|---|---|
PDB code | 3LB1 | 3LB2 | 3LB3 | 3LB4 |
Space group | P212121 | P212121 | P212121 | P212121 |
Unit-cell parameters | ||||
a (Å) | 57.84 | 58.01 | 58.20 | 59.78 |
b (Å) | 67.25 | 67.36 | 67.21 | 67.49 |
c (Å) | 69.13 | 69.42 | 68.72 | 67.84 |
Data collection | ||||
Temperature (K) | 100 | 100 | 100 | 100 |
Wavelength (Å) | 1.5000 | 0.91942 | 1.0000 | 1.0000 |
Resolution (Å) | 35.0–1.76 | 35.0–1.06 | 35.0–1.85 | 35.0–1.56 |
(1.81–1.76)† | (1.09–1.06)† | (1.90–1.85)† | (1.60–1.56)† | |
Unique reflections | 25737(1737)† | 121970(8490)† | 22277(15730)† | 33583(2740)† |
Completeness (%) | 94.24(87.82)† | 98.67(93.80)† | 94.25(92.91)† | 94.03(95.34)† |
Rmerge‡ (%) | 4.1(9.8) | 5.2(31.8) | 10.1(32.2) | 6.1(38.3) |
I/σI | 37.9(13.2)† | 22.5(3.8)† | 7.9(3.4)† | 10.9(3.9)† |
Redundancy | 3.5(3.4)† | 4.0(3.3)† | 3.4(3.4)† | 3.1(3.3)† |
Refinement | ||||
Rwork/Rfree (%)§ | 18.6/22.7 | 16.8/18.3 | 18.7/24.3 | 19.5/23.5 |
Average B factor (Å2) | ||||
All atoms | 12.73 | 10.16 | 19.13 | 17.19 |
Protein | 11.81 | 8.98 | 18.55 | 15.19 |
Water | 21.59 | 20.21 | 30.35 | 28.75 |
No. of atoms | ||||
Protein | 2658 | 3122 | 2192 | 2849 |
Water | 268 | 356 | 213 | 299 |
RMSD from ideal | ||||
Bond length (Å) | 0.008 | 0.006 | 0.008 | 0.011 |
Bond angle (deg) | 1.124 | 1.170 | 1.157 | 1.377 |
Ramachandran plot¶ (%) | ||||
Most favored | 94.4 | 94.4 | 94.4 | 94.8 |
Allowed | 5.6 | 5.6 | 5.6 | 5.2 |
Crystal containing 4-halophenol in complex with WT DHP; the letter specifies the halogen substituent.
Values in parentheses are the highest-resolution shell.
Rmerge= (ΣhΣi{} × 100%, where Ii is the ith measurement and <I(h)> is the weighted mean of all measurements of I(h).
Rwork = Σ|Fo − Fc|/ΣFo × 100%, where Fo and Fc are observed and calculated structure factors, respectively; Rfree is R factor for the subset (5%) of reflections selected before, and not included in the refinement.
Calculated using PROCHECK.