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. 2010 Sep 8;99(5):1611–1619. doi: 10.1016/j.bpj.2010.06.027

Figure 2.

Figure 2

Protein motions affect calculated solvent density. (A) Average solvent density obtained from MD simulations where the protein atoms are allowed to move and (B) the resulting reconstruction. (C and D) Reconstructions for two different protein conformations calculated using pRDFs obtained from the dynamic protein. Note p = electrons.