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. Author manuscript; available in PMC: 2011 Jul 7.
Published in final edited form as: J Am Chem Soc. 2010 Jul 7;132(26):8961–8972. doi: 10.1021/ja100447p

Table 1.

The results of RDC-guided docking using PATIDOCK-t for the SINGLE dataset based on synthetic RDC data with added experimental noise.

Protein PDBa 0 Hzb 1 Hzb,c 3 Hzb,c Time(s)d #Sol.e
B1 domain of protein G32 3gb1 0.07 [0.07] 0.26 [0.97] 0.67 [3.11] 1.46 2
B3 domain of protein G33 2oed 0.09 [0.05] 0.42 [1.02] 1.31 [2.78] 1.55 2
Cyanovirin-N34 2ezm 0.03 [0.02] 0.31 [1.01] 0.70 [2.90] 2.81 3
Gα interacting protein35 1cmz 0.03 [0.02] 0.35 [1.00] 1.02 [2.94] 2.23 2
Ubiquitin36 1d3z 0.02 [0.02] 0.27 [0.97] 0.66 [2.83] 1.64 2
Hen lysozyme37 1e8l 0.05 [0.04] 0.15 [1.00] 0.49 [2.88] 1.75 2
Oxidized putidaredoxin38 1yjj 0.06 [0.05] 0.19 [1.00] 0.71 [2.86] 1.85 2

Mean 0.05 [0.04] 0.28 [1.00] 0.79 [2.90] 1.90 2.14
a

The RCSB Protein Data Bank code for protein coordinates. First model from the ensemble of NMR structures was used for all calculations.

b

Δc (in Å), the best distance between the original and the predicted centers of the second domain. The values in brackets represent the RMSD (in Hz) between the synthetic RDCs and the predicted RDCs at the solution. The column labels represent the size of the standard deviation of the normally distributed noise added to synthetic RDCs. “0 Hz” corresponds to no noise added to synthetic RDCs.

c

The values represent an average of twelve independent runs.

d

The average elapsed time (in seconds) for PATIDOCK-t based on all the runs for “0 Hz”, “1 Hz”, and “3 Hz”.

e

The number of possible solutions, all of which have a very similar predicted alignment tensor.