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. Author manuscript; available in PMC: 2011 Jul 7.
Published in final edited form as: J Am Chem Soc. 2010 Jul 7;132(26):8961–8972. doi: 10.1021/ja100447p

Table 2.

The results of RDC-guided docking using PATIDOCK-t for the SINGLE dataset based on experimental RDC data.

Protein PDBa Δcb RMSDRDCc Time(s)d #Sol.e
B1 domain of protein G 3gb1 2.07 1.13 0.58 2
B3 domain of protein G 2oed 4.15 1.32 0.61 2
Cyanovirin-N 2ezm 5.01 4.00 0.75 2
Gα interacting protein 1cmz 6.19 1.34 0.80 2
Ubiquitin 1d3z 3.86 1.35 0.75 2
Hen lysozyme 1e8l 3.42 7.24 0.94 2
Oxidized putidaredoxin 1yjj 5.17 4.50 1.13 2

Mean 4.27 2.98 0.79 2.00
a

The RCSB Protein Data Bank code for protein coordinates. First model from the ensemble of NMR structures was used for all calculations.

b

The distance (in Å) between the original and the predicted center of the second domain.

c

The RMSD (in Hz) between the experimental and the predicted RDC values at the best predicted minimizer.

d

The elapsed time (in seconds) required for docking.

e

The number of possible solutions, all of which have a very similar predicted alignment tensor.