Table 2.
The results of RDC-guided docking using PATIDOCK-t for the SINGLE dataset based on experimental RDC data.
| Protein | PDBa | Δcb | RMSDRDCc | Time(s)d | #Sol.e |
|---|---|---|---|---|---|
| B1 domain of protein G | 3gb1 | 2.07 | 1.13 | 0.58 | 2 |
| B3 domain of protein G | 2oed | 4.15 | 1.32 | 0.61 | 2 |
| Cyanovirin-N | 2ezm | 5.01 | 4.00 | 0.75 | 2 |
| Gα interacting protein | 1cmz | 6.19 | 1.34 | 0.80 | 2 |
| Ubiquitin | 1d3z | 3.86 | 1.35 | 0.75 | 2 |
| Hen lysozyme | 1e8l | 3.42 | 7.24 | 0.94 | 2 |
| Oxidized putidaredoxin | 1yjj | 5.17 | 4.50 | 1.13 | 2 |
| Mean | 4.27 | 2.98 | 0.79 | 2.00 | |
The RCSB Protein Data Bank code for protein coordinates. First model from the ensemble of NMR structures was used for all calculations.
The distance (in Å) between the original and the predicted center of the second domain.
The RMSD (in Hz) between the experimental and the predicted RDC values at the best predicted minimizer.
The elapsed time (in seconds) required for docking.
The number of possible solutions, all of which have a very similar predicted alignment tensor.