Table 2.
Summary of patient tissues and fluids used for the detection of HPV.
| Sample | Sample origin | HPV (previously typed) | HPV E1 qPCR | HPV L1 qPCR |
|---|---|---|---|---|
| 962046 | anal virapap swab | 11 | + | 11 |
| 950450 | anal virapap swab | 16 | + | 16 |
| 972696 | anal virapap swab | 33‡ | + | - |
| 971380 | anal virapap swab | 35‡ | + | - |
| 000699 | anal virapap swab | 40* | + | - |
| 061675 | anal virapap swab | 45§ | + | - |
| 983165 | anal virapap swab | 52‡ | + | - |
| 972762 | anal virapap swab | 54 | + | - |
| 972666 | anal virapap swab | 59§ | + | - |
| 980280 | anal virapap swab | 69 | + | - |
| 980520 | anal virapap swab | 73 | + | - |
| 950474 | anal virapap swab | 83 | + | - |
| 081673 | anal virapap swab | 89 | + | - |
| 950472 | anal virapap swab | 16,53 | + | 16 |
| 950508 | anal virapap swab | 56,68§,84 | + | - |
| 950504 | anal virapap swab | 6,11,18,26,33,45§,54,73 | + | 6,11,18 |
| 950496 | anal virapap swab | 6,16,45§,53,58‡,61,70§,83,84 | + | 6 |
| 071455 | anal preservecyt swab | 42 | + | - |
| 071537 | anal preservecyt swab | 51 | + | - |
| 071113 | anal preservecyt swab | 71 | + | - |
| 071424 | anal preservecyt swab | 81 | + | - |
| 963601 | Cervical lavage | 67‡ | + | - |
| 950475 | cervical virapap swab | 6 | + | 6 |
| 950505 | cervical virapap swab | 18 | + | 18 |
| 950507 | cervical virapap swab | 26 | + | - |
| 962678 | cervical virapap swab | 31‡ | + | - |
| 950433 | cervical virapap swab | 32 | + | - |
| 962047 | cervical virapap swab | 53 | + | - |
| 950479 | cervical virapap swab | 54 | + | - |
| 972833 | cervical virapap swab | 55* | + | - |
| 962721 | cervical virapap swab | 66 | + | - |
| 972835 | cervical virapap swab | 82 | + | - |
| 971371 | cervical virapap swab | 84 | + | - |
| 036465 | cervical virapap cytobrush | 58‡ | + | - |
| 040670 | cervical preservecyt swab | 56 | + | - |
| CL1 | Cervical lavage | N/D | - | - |
| CL2 | Cervical lavage | N/D | + | 6/16 |
| CL3 | Cervical lavage | N/D | + | - |
| CL4 | Cervical lavage | N/D | - | - |
| CL5 | Cervical lavage | N/D | - | - |
| CL6 | Cervical lavage | N/D | + | 6 |
| CL7 | Cervical lavage | N/D | + | 6,18 |
| CL8 | Cervical lavage | N/D | - | - |
| CL9 | Cervical lavage | N/D | - | - |
| CL10 | Cervical lavage | N/D | - | - |
| CL11 | Cervical lavage | N/D | + | - |
| CL12 | Cervical lavage | N/D | - | - |
| CL13 | Cervical lavage | N/D | - | - |
| CL14 | Cervical lavage | N/D | - | - |
| CL15 | Cervical lavage | N/D | - | - |
| CL16 | Cervical lavage | N/D | - | - |
| CL17 | Cervical lavage | N/D | - | - |
| CL18 | Cervical lavage | N/D | + | - |
| CL19 | Cervical lavage | N/D | - | - |
| CL20 | Cervical lavage | N/D | - | - |
| CL21 | Cervical lavage | N/D | + | 6 |
| CL22 | Cervical lavage | N/D | - | - |
| CL23 | Cervical lavage | N/D | + | - |
| CL24 | Cervical lavage | N/D | - | - |
| CL25 | Cervical lavage | N/D | - | - |
| A1 | S/D Oral biopsy | N/D | - | - |
| A2 | S/D Oral biopsy | N/D | - | - |
| A3 | S/D Oral biopsy | N/D | - | - |
| A4 | S/D Oral biopsy | N/D | - | - |
| A5 | S/D Oral biopsy | N/D | - | - |
| A6 | S/D Oral biopsy | N/D | - | - |
| A7 | S/D Oral biopsy | N/D | - | - |
| A8 | S/D Oral biopsy | N/D | - | - |
| A9 | S/D Oral biopsy | N/D | - | - |
| A10 | S/D Oral biopsy | N/D | - | - |
| A11 | S/D Oral biopsy | N/D | - | - |
| A12 | S/D Oral biopsy | N/D | - | - |
| B1 | S/D Oral biopsy | N/D | - | - |
| B2 | S/D Oral biopsy | N/D | - | - |
| B3 | S/D Oral biopsy | N/D | - | - |
| B4 | S/D Oral biopsy | N/D | - | - |
| B5 | S/D Oral biopsy | N/D | - | - |
| B6 | S/D Oral biopsy | N/D | - | - |
| B7 | S/D Oral biopsy | N/D | - | - |
| B8 | S/D Oral biopsy | N/D | - | - |
| B9 | S/D Oral biopsy | N/D | - | - |
| B10 | S/D Oral biopsy | N/D | - | - |
| B11 | S/D Oral biopsy | N/D | - | - |
| B12 | S/D Oral biopsy | N/D | + | 16 |
| C1 | S/D Oral biopsy | N/D | - | - |
| C2 | S/D Oral biopsy | N/D | - | - |
| C3 | S/D Oral biopsy | N/D | - | - |
| C4 | S/D Oral biopsy | N/D | - | - |
| C5 | S/D Oral biopsy | N/D | - | - |
| C6 | S/D Oral biopsy | N/D | - | - |
| C7 | S/D Oral biopsy | N/D | - | - |
| C8 | S/D Oral biopsy | N/D | + | 16 |
| C9 | S/D Oral biopsy | N/D | + | 16 |
| C10 | S/D Oral biopsy | N/D | + | 16 |
| C11 | S/D Oral biopsy | N/D | + | 16 |
| C12 | S/D Oral biopsy | N/D | - | - |
| D1 | S/D Oral biopsy | N/D | - | - |
| D2 | S/D Oral biopsy | N/D | - | - |
| D3 | S/D Oral biopsy | N/D | - | - |
| D4 | S/D Oral biopsy | N/D | - | - |
| D5 | S/D Oral biopsy | N/D | - | - |
| D6 | S/D Oral biopsy | N/D | - | - |
| D7 | S/D Oral biopsy | N/D | - | - |
| D8 | S/D Oral biopsy | N/D | - | - |
| D9 | S/D Oral biopsy | N/D | - | - |
| D10 | S/D Oral biopsy | N/D | - | - |
| D11 | S/D Oral biopsy | N/D | - | - |
| D12 | S/D Oral biopsy | N/D | + | 16 |
| E1 | S/D Oral biopsy | N/D | + | 16 |
| E2 | S/D Oral biopsy | N/D | - | - |
| E3 | S/D Oral biopsy | N/D | - | - |
| E4 | S/D Oral biopsy | N/D | - | - |
| E5 | S/D Oral biopsy | N/D | - | - |
| E6 | S/D Oral biopsy | N/D | + | 16 |
| 3 | NS/ND Oral biopsy | 16 | N/D | 16 |
| 4 | NS/ND Oral biopsy | 16 | N/D | 16 |
| 7 | NS/ND Oral biopsy | - | N/D | - |
| 9 | NS/ND Oral biopsy | 16 | N/D | 16 |
| 12 | NS/ND Oral biopsy | 16 | N/D | - |
| 13 | NS/ND Oral biopsy | 16 | N/D | 16 |
| 15 | NS/ND Oral biopsy | - | N/D | - |
| 16 | NS/ND Oral biopsy | - | N/D | 18 |
| 18 | NS/ND Oral biopsy | - | N/D | - |
| 20 | NS/ND Oral biopsy | - | N/D | - |
| 21 | NS/ND Oral biopsy | 18 | N/D | - |
| 23 | NS/ND Oral biopsy | 16 | N/D | - |
| 27 | NS/ND Oral biopsy | - | N/D | - |
| 32 | NS/ND Oral biopsy | - | N/D | - |
| 35 | NS/ND Oral biopsy | 18 | N/D | 6/18 |
| 36 | NS/ND Oral biopsy | - | N/D | - |
| 37 | NS/ND Oral biopsy | 18 | N/D | - |
| 38 | NS/ND Oral biopsy | - | N/D | - |
| 39 | NS/ND Oral biopsy | 18 | N/D | - |
| 40 | NS/ND Oral biopsy | 16 | N/D | 16 |
| 51 | NS/ND Oral biopsy | 16 | N/D | 16 |
| 52 | NS/ND Oral biopsy | 16 | N/D | - |
| 082481 | Foot plantar wart | 2 | + | - |
| 082458 | Foot plantar wart | 57 | + | - |
| MX1 | 28 | + | - | |
| MX2 | 64 | + | - | |
HPV6/11-related; *, HPV16-related; ‡, HPV18-related; §, N/D; not determined