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. Author manuscript; available in PMC: 2011 Sep 1.
Published in final edited form as: Microbes Infect. 2010 May 11;12(10):716–726. doi: 10.1016/j.micinf.2010.04.014

Table 1.

Table 1 A. PCR primers and annealing temperatures for trans-sialidase and TcPKAc genes

Trans-sialidase genes and
TcPKAc gene
PCR primers Annealing
Temperature
Tc00.1047053508563.20 Forward- (Nhe1)
CTAGCTAGC ATGCTCTCACGTGTTGCTGC Reverse- (Xbal1)
GATCTCTAGA TCACGCAGTCGCAAAGCCCC
55°C
Tc00.104753509187.10 Forward- (Nhe1)
CTAGCTAGCATGTCCCGGCGTGTGTTTACT Reverse- (Xbal1)
GATCTCTAGATCACGCAGCCGCAAACCC
55°C
Tc00.1047053507839.40 Forward- (Xho1)
CCGCTCGAG ATGCTCTCACGTGTTGCTG Reverse- (Sal1)
ACGCGTCGAC TCACGCAGCCGCAAAGCCC
66°C
Tc00.104753510111.20 Forward- (Xho1)
CCGCTCGAG ATGCTCTCACGTGTTGCTG Reverse- (Sal1)
ACGCGTCGAC TCACGCAGTCGCAAGGCCC
66°C
TcPKAc (Genbank, AY055783) Forward- (EcoR1)
CGGAATTCATGTCAGGGGAGGCAAATTATG Reverse- (Pst1)
AACTGCAGTTAGAACCCAATAAACTCCGCCTG
55°C
Table 1B. In silico analysis of PKA phosphorylation site.
Each of trans-sialidase protein sequences was analyzed against PROSITE patterns and profiles
(http://us.expasy.org/prosite). All of these proteins contain typical PKA phosphorylation sites. The numbers indicate
the location of the sites in the various protein sequences.

Trans-sialidase genes cAMP- dependent protein kinase phosphorylation site
Tc00.1047053508563.20 113 – 116: KKgT; 120 – 123: RRdS; 465 – 468: RRvS;
624 – 627: KKlT
Tc00.104753509187.10 17 – 20: RRvT; 635 – 638: KKiS
Tc00.1047053507839.40 17 – 20: RRvT; 239 – 242: KRiS; 633 – 636: KKaS
Tc00.104753510111.20 17 – 20: RRvT; 468 – 471: RRgS; 649 – 652: KKrS;
699 – 702: KKpS
Tc00.1047053508285.60(SA1.1) 17 – 20: RRvT; 119 – 122: RRdS; 466 – 469: RRdS;
624 – 627: KKpT
TcTS 6 11/2 12 – 15: KRqS
Table 1C. Myristoylation sites exist in TcPKAc
The PROSITE program was used to identify N-myristoylation sequences in both TcPKAc isoforms

TcPKAc Myristoylation site
Protein kinase A catalytic subunit isoform-1
(Tc00.1047053508461.310)
306 – 311: GLlqTD; 317 – 322: GTlkGG
Protein kinase A catalytic subunit isoform- 2
(Tc00.1047053508461.280)
25 – 30: GstlGA; 250 – 255: GLlqTD; 261 – 266:
  GTlkGG