Table 2.
List of metabolites used in the metabolic model.
| Metabolite | Molecular formula | Full name |
|---|---|---|
| 2PG | C3H7O7P | 2-phophoglycerate |
| 3PG | C3H7O7P | 3-phophoglycerate |
| 6PG | C6H13O10P | 6-phosphogluconate |
| 6PGL | C6H11O9P | 6-phosphogluconolactone |
| Ac | C2H4O2 | Acetate |
| AcACP | C2H3OPept | Acetyl ACP |
| AcCoA | C23H34O17N7P3S | Acetyl CoA |
| ACP | HPept | Acyl carrier protein |
| ADP | C10H15O10N5P2 | Adenosine diphosphate |
| ADPHEP | C17H27O16N5P2 | ADP-Mannoheptose |
| AICAR | C9H15O8N4P | Amino imidazole carboxamide ribonucleotide |
| aKGA | C5H6O5 | Alpha ketoglutaric acid |
| aKIV | C5H8O3 | Alpha-keto-isovalerate |
| Ala | C3H7O2N | Alanine |
| AMP | C10H14O7N5P | Adenosine monophosphate |
| Ar5P | C5H11O8P | Arabinose-5-phosphate |
| Arg | C6H14O2N4 | Arginine |
| Asn | C4H8O3N2 | Aspartate |
| Asp | C4H7O4N | Asparagine |
| AspSA | C4H7O3N | Aspartate semialdehyde |
| ATP | C10H16O13N5P3 | Adenosine triphosphate |
| Biom | CH1.63O0.392N0.244P0.021S0.00565 | Biomass |
| BPG | C3H8O10P2 | 1-3-biphosphoglycerate |
| C120ACP | C12H23OPept | |
| C140ACP | C14H27OPept | |
| C160ACP | C16H31OPept | |
| C181ACP | C18H33OPept | |
| CarP | CH4O5NP | Carbamoyl phosphate |
| CDP | C9H15O11N3P2 | Citidine diphosphate |
| CDPDGo | C46H83O15N3P2 | CDP-diacylglycerol |
| CDPEthAn | C11H20O11N4P2 | CDP-ethanolamine |
| Chor | C10H10O6 | Chorismate |
| Cit | C6H8O7 | cisaconitate |
| CL | C77H144O16P2 | Cardiolipin |
| CMP | C9H14O8N3P | Citidine monophosphate |
| CMPKDO | C17H26O15N3P | CMP-2-keto-3-deoxyoctanoate |
| CO2 | CO2 | Carbon dioxide |
| CoA | C21H32O16N7P3S | Coenzyme A |
| CTP | C9H16O14N3P3 | Citidine triphosphate |
| Cys | C3H7O2NS | Cysteine |
| dADP | C10H15O9N5P2 | deoxy ADP |
| Dahp | C7H13O10P | Deoxy arabino heptulosonate |
| dATP | C10H16O12N5P3 | deoxy ATP |
| dCDP | C9H15O10N3P2 | deoxy CDP |
| dCTP | C9H16O13N3P3 | deoxy CTP |
| dGDP | C10H15O10N5P2 | deoxy GDP |
| DGo | C37H70O5 | Diacyl glycerol |
| dGTP | C10H16O13N5P3 | deoxy GTP |
| DHAP | C3H7O6P | Dihydroxyaceton phosphate |
| DHF | C19H21O6N7 | Dihydrofolate |
| Dhq | C7H10O6 | Dehydroquinate |
| Dhs | C7H8O5 | Dehydroshikimate |
| DNA | C9.75H14.2O7N3.75P | DNA composition |
| dTDP | C10H16O11N2P2 | deoxy TDP |
| dTMP | C10H15O8N2P | deoxy TMP |
| dTTP | C10H17O14N2P3 | deoxy TTP |
| dUDP | C9H14O11N2P2 | deoxy UDP |
| dUMP | C9H13O8N2P | deoxy UMP |
| dUTP | C9H15O14N2P3 | deoxy UTP |
| E4P | C4H9O7P | Erythrose-4-phosphate |
| F6P | C6H13O9P | Fructose-6-phosphate |
| FA | CH2O2 | Formic Acid |
| FAD | C27H33O15N9P2 | Flavine adeninen dinucleotide |
| FADH2 | C27H35O15N9P2 | |
| FBP | C6H14O12P2 | Fructose-1-6-biphosphate |
| FTHF | C20H23O7N7 | Formyl tetrahydrofolate |
| Fum | C4H4O4 | Fumarate |
| G1P | C6H13O9P | Glucose-1-phosphate |
| G3P | C3H7O6P | Glyceraldehyde-3-phosphate |
| G6P | C6H13O9P | Glucose-6-phosphate |
| GA1P | C6H14O8NP | D-glucosamine-6-phosphate |
| GA6P | C6H14O8NP | Glucose-6-phosphate |
| GDP | C10H15O11N5P2 | Guanosine diphosphate |
| GLC | C6H12O6 | Glucose |
| Glcg | C6H10O5 | Glycogen |
| Gln | C5H10O3N2 | Glutamine |
| Glu | C5H9O4N | Glutamate |
| Gly | C2H5O2N | Glycine |
| GMP | C10H14O8N5P | Guanosine monophosphate |
| Go3P | C3H9O6P | Glycerol-3-phosphate |
| GTP | C10H16O14N5P3 | Guanosine triphosphate |
| H | H+ | Hydrogene |
| H2CO3 | CH2O3 | Bicarbonate |
| H2O | H2O | Water |
| H2O2 | H2O2 | |
| H2S | H2S | Hydrogene sulde |
| H2SO4 | H2O4S | Sulfuric acid |
| His | C6H9O2N3 | Histidine |
| HSer | C4H9O3N | Homoserine |
| iCit | C6H8O7 | Isocitrat |
| Ile | C6H13O2N | Isoleucine |
| IMP | C10H13O8N4P | Inosine monophosphate |
| Lac | C3H6O3 | Lactate |
| Leu | C6H13O2N | Leucine |
| Lipa | C110H196O32N2P2 | Lipid A |
| Lipid | C40.2H77.6O8.41N0.771P1.03 | Lipid composition |
| Lps | C171H298O81N4P2 | Lipo Poly saccharide |
| Lys | C6H14O2N2 | Lysine |
| Mal | C4H6O5 | Malate |
| MalACP | C3H3O3Pept | Malonyl ACP |
| MalCoA | C24H34O19N7P3S | Malonyl CoA |
| MDAP | C7H14O4N2 | Meso-diaminopimelate |
| Met | C5H11O2NS | Methionine |
| MeTHF | C20H23O6N7 | Methylene tetrahydro folate |
| MTHF | C20H25O6N7 | Methyl tetrahydrofolate |
| NAD | C21H28O14N7P2+ | Nicotinamide adenine dinucleotide |
| NADH | C21H29O14N7P2 | |
| NADP | C21H28O17N7P3+ | Nicotinamide adenine dinucleotide phosphate |
| NADPH | C21H29O17N7P3 | |
| NH3 | H3N | Ammonia |
| O2 | O2 | Oxygen |
| OAA | C4H4O5 | Oxaloacetate |
| Orn | C5H12O2N2 | Ornithine |
| PA | C37H71O8P | Phosphatidyl acid |
| PAP | C10H15O10N5P2 | Phospho adenosine phosphate |
| PEP | C3H5O6P | Phosphoenolpyruvate |
| Peptido | C35H53O16N7 | Peptidoglycan |
| PEthAn | C39H76O8NP | Phosphatidyl ethanolamine |
| PG | C40H75O9P | Phosphatidyl glycerol |
| Phe | C9H11O2N | Phenylalanine |
| PiOH | H3O4P | Phosphate |
| PPiOH | H4O7P2 | Pyrophosphate |
| Pro | C5H9O2N | Proline |
| Prot | C4.8H7.67O1.4N1.37S0.046 | Protein composition |
| PRPP | C5H13O14P3 | 5-phospho-alpha-D-ribosyl-1-pyrophosphate |
| PSer | C40H76O10NP | Phosphatidyl Serine |
| Pyr | C3H4O3 | Pyruvate |
| R5P | C5H11O8P | Ribose-5-phosphate |
| Rl5P | C5H11O8P | Ribulose-5-phosphate |
| RNA | C9.58H13.8O7.95N3.95P | RNA composition |
| S7P | C7H15O10P | Sedoheptulose-7-phosphate |
| Ser | C3H7O3N | Serine |
| Shi | C7H10O5 | Shikimate |
| Shi3P | C7H11O8P | Shikimate-3-phosphate |
| Suc | C4H6O4 | Succinate |
| SucCoA | C25H36O19N7P3S | Succinyl CoA |
| THF | C19H23O6N7 | Tetrahydrofolate |
| Thiored | Pept | Thioredoxin |
| ThioredH2 | H2Pept | Reduced thioredoxin |
| Thr | C4H9O3N | Threonine |
| Trp | C11H12O2N2 | Tryptophan |
| Tyr | C9H11O3N | Tyrosine |
| UDP | C9H14O12N2P2 | Uridine diphosphate |
| UDPGlc | C15H24O17N2P2 | UDP glucose |
| UDPNAG | C17H27O17N3P2 | UDP N-acetyl glucosamine |
| UMP | C9H13O9N2P | Uridine monophosphate |
| UTP | C9H15O15N2P3 | Uridine triphosphate |
| Val | C5H11O2N | Valine |
| XMP | C10H13O9N4P | Xanthosine-5-phosphate |
| Xu5P | C5H11O8P | Xylulose-5-phosphate |