Table 1.
RBPs aberrantly expressed in tumors
| UP | DOWN | |
|---|---|---|
| breast | DRB1, ASCC1, ZNF638, RNASEL, COVA1, CUGBP1, HTATSF1, RBM27, FMR1, ELAVL4, MYEF2, NCBP1, SLC4A1AP, ZCRB1, RBM35B, DSRAD, JOSD2, DDX53, TIA1, POLDIP3, APOBEC1, ELAVL3, IGF2BP1, NCBP2, RBM35A, RBP56, PPARGC1B, PNPT1, RTCD1 | TNRC6C, RPS4Y1 |
| colon | SYNCRIP, TRBP2, SR140, CPSF5, FUBP2, HNRPDL, PAIP1, PPIE, PNPT1, HRB, NOL8, NCBP2, RPL22, PSMA1, FXR1, PTBP1, CSTF3, SRP72, FUS, KRR1, HNRPM, DHX9, PABP4, ILF3, SNRPB2, DKC1, NUFIP1, RBM9, HNRPUL1, FBL, EXOSC7, RBM8A, NOL3, FUBP1, HNRPG, HARS, HNRPU, EIF3S9, ElF3S4, RPL12, NKRF, NCL, LSM5, SAFB1, DSRAD, NHP2L1, NPM1, MARS, MRPL23, HNRPL, NONO, LA, TIAR, RPL34, MRPL3, RBM26, RPL13, RPL18, SLBP, RBPMS, RPLP2, RPL7, RPS5, SIAHBP1, RPL28, RPS17, RBM19, PCBP1, PABP2, RBM14, RBM10, RPS3, ELAV1 | DKFZp686F02235, RNASE1 |
| liver | RPL7, SIAHBP1, HNRPG, HNRPLL, SNRPA, NCBP2, PTBP1, SF3B14, SF3B4, RPS5, EIF3S9, PAPOLG, FUBP1, DKC1, MGC10433, IGF2BP2, NUFIP1, T1A1, PNPT1, RNMT, RCAN3, IGF2BP3, HNRPUL1, RBM9, CPSF6, RPL18, GARS, RBM8A, APOBEC1, RBM28, C20orf119, ANKRD17, NONO, MARS, TARDBP, SYNJ2, LRPPRC, RBM10 AKAP1, FXR1 | |
| prostate | ANKRD17, DICER, SNRPA, CSTF3, NOL8, C20orf119, STRBP, TUT1 RBM35A, CSTF2, SYNJ2 | TACC1, RBM38, IGF2BP3, IREB1, ACF |
| leukemia | RBM28 | U2AF2, ROD1, CPEB2, SAFB2, SRP14, SR140, SNRP70, SFRS12, TACC1, SLTM, RBMS1, MINT, LKAP, NOL8, MTHFSD, FMR1, ERAL1, LARP7, KRR1, RBM25, RBM23, RBM44, RBM26, ACIN1, DND1, RBM16, PSPC1 |
| nervous system* | ANKHD1, C20orf119, CNOT4, COVA1, CPEB2, CPSF6, DHX9, DKC1, EIF3S9, HNRPK, HNRPUL1, LA, LARP7, MSI1, MTHFSD, NOL8, NONO, NOVA, NPM1, NXF1, PAIP1, PPIL4, PRKRA, RBM15B, RBM25, RBM28, RBM39, RO60, RPL12, RPL13, RPL18A, RPL34, RPS17, RPS5, RPS9, SPF45 | |
| gastric | R06U, EIF3S9, NONO, FXR1, NKRF, CSTF2, FUBP1 | |
| thyroid | IREB1 | |
| lung | RPL18, RTCD1, PABP4, PSMA1, MRPL23, CNOT4, CSTF2, PTBP1, RBM14, SYNJ2, TRBP2, RBM34, SFR51, SART3, DKC1, TUT1, RBM16, MARS, RBM12, U2AF2, RENT1, RBM4, DAZAP1, MRPL12, SIAHBP1, AKAP1, CPSF6, LA, NCBP2, DSRAD, EIF3S4, GARS, FUBP1, FBL, FUBP2, HTF9C, FUS, GRSF1, STRBP, PPIE, ANKRD1 | PAPOLG, CDKN2AIP, CUGBP2, RNH1, RBM25, TACC1 |
We list all RBPs according to tissue type determined to be aberrantly expressed (over or under expression) in combined “normal vs. tumor” analyses performed with SAGE and microarray data obtained from the ONCOMINE resource.