Table 1.
Datasets used to test the method
| Dataset name | ENCODE region | Chromosome band | Genomic segment (kp) | HapMap population | Number of SNPs (MAF > 0.03) | Number of haplotypes |
|---|---|---|---|---|---|---|
| ENm010_CHB+JPT | ENm010 | 7p15.2 | 27 070–27 126 | CHB+JPT | 15 | 340 |
| ENr131_CEU | ENr131 | 2q37.1 | 235 065–235 122 | CEU | 31 | 234 |
| ENr321_YRI | ENr321 | 8q24.11 | 118 797–118 895 | YRI | 47 | 230 |
These datasets were obtained from the HapMap repository (version III, release 2) using the Genome Browser web application (http://hapmap.ncbi.nlm.nih.gov). Only SNPs with MAF > 0.03 were considered.