Table 1.
SNP | ABI assay ID | Allele | HWpval | Freq. | Trans | Not Transmitted | χ 2 | p value (1df) |
---|---|---|---|---|---|---|---|---|
rs3795283 | A | 1.00 | 0.333 | 231 | 252 | 0.913 | 0.339 | |
rs2376805 | C_16000020_10 | G | 0.33 | 0.189 | 147 | 193 | 6.243 | 0.012a |
rs2376803 | C_16000021_10 | C | 0.47 | 0.312 | 208 | 258 | 5.375 | 0.020 |
rs7513222 | C_30490003_10 | A | 0.43 | 0.348 | 242 | 250 | 0.130 | 0.718 |
1000 permutations were performed using UNPHASED on the best p value to correct for the number of tests (global significance: p=0.062; SE=0.008). HWpval indicates the p value for the test of Hardy-Weinberg Equilibrium.