Table S7.
Transcripts and protein variants for mouse Cpeb4. Each mRNA corresponds to the protein in the same row. The translation is regarded as “disconnected” when none of the 6 frames gives continuous read. The translation is considered “fragmented” if it starts with the first codon which is not a Methionine, or terminates at the last codon which is not a stop codon. The asterisk * indicates that protein sequence is not documented in the database but derived from translation of cDNA using Vector NTI software. cDNAs highlighted in grey are used for comparison.
| mRNA | Size (bp) | Description | Protein | Size (aa) | Comments |
|---|---|---|---|---|---|
| AK089951.1 | 1774 | Mus musculus kidney CCL-142 RAG cDNA | Translated* | 128 (1–128) | Fragmented |
| AK088039.1 | 1904 | Mus musculus 2 days neonate thymus thymic cells cDNA | – | Disconnected translation | |
| AK079421.1 | 3217 | Mus musculus adult male bone cDNA, | – | Disconnected translation | |
| AY313775.1 | 2313 | Mus musculus cytoplasmic polyadenylation element binding protein 4 (cpeb4) mRNA, complete cds | AAQ20844.1 | 729 | |
| AK173229.1 | 7585 | Mus musculus mRNA for mKIAA1673 protein | BAD32507.1 | 704 | 25-aa deletion |
| BC079599.1 | 5437 | Mus musculus cytoplasmic polyadenylation element binding protein 4, mRNA | Translated* | 339 (383–721) | 8-aa deletion |
| AK162101.1 | 2164 | Mus musculus in vitro fertilized eggs cDNA, | BAE36725.1 | 262 (1–262) | Fragmented |
| AK154289.1 | 2438 | Mus musculus NOD-derived CD11c +ve dendritic cells cDNA | BAE32491.1 | 338 (1–338) | Fragmented |
| BC115431.1 | 2279 | Mus musculus cytoplasmic polyadenylation element binding protein 4, mRNA | AAI15432.1 | 704 | 25-aa deletion |
| BC115430.1 | 2279 | Mus musculus cytoplasmic polyadenylation element binding protein 4, mRNA | AAI15431.1 | 704 | 25-aa deletion |
| BC145865.1 | 2300 | Mus musculus cytoplasmic polyadenylation element binding protein 4, mRNA | AAI45866.1 | 729 | |
| BC145863.1 | 2300 | Mus musculus cytoplasmic polyadenylation element binding protein 4, mRNA | AAI45864.1 | 729 | |
| AK021394.1 | 1066 | Mus musculus 0 day neonate eyeball cDNA | Translated* | 141 (589–729) | Fragmented |
| AK015401.1 | 1586 | Mus musculus adult male testis cDNA | BAB29832.1 | 295 (435–729) | |
| AK015381.1 | 1077 | Mus musculus adult male testis cDNA | BAB29821.1 | 295 (435–729) | |
| NM_026252.3 | 2312 | Mus musculus cytoplasmic polyadenylation element binding protein 4 (cpeb4), mRNA | NP_080528.2 | 729 |