Table S5.
Transcript and protein variants for mouse Cpeb3. Each mRNA corresponds to the protein in the same row. The translation is regarded as “disconnected” when none of the 6 frames gives a continuous read. The # indicates the discrepancy we found from a theoretical translation of cDNA using Vector NTI software. The asterisk * indicates that the protein sequence is not documented in any database but is derived from a theoretical translation of cDNA using Vector NTI software. cDNAs highlighted in grey are used for comparison.
| mRNA | Size (bp) | Description | Protein | Size (aa) | Comments |
|---|---|---|---|---|---|
| AK044639.1 | 4223 | Mus musculus adult retina cDNA | Translated* | 693 | *189th a top codon; 23-aa deletion |
| AK029261.1 | 2411 | Mus musculus 0 day neonate head cDNA | Translated* | 469 | 216-aa truncation; a 23-aa deletion; a 8-aa deletion |
| AB093274.1 | 5310 | Mus musculus mRNA for mKIAA0940 protein | BAC41458.1# | 716 | #Reported as 722 aa, but we presume it is 716 aa identical to NP_938042, because the 1st Methionine is the 7th aa. |
| AY313774.1 | 3148 | Mus musculus cytoplasmic polyadenylation element binding protein 3 (cpeb3) mRNA, complete cds | AAQ20843.1 | 716 | Compare to NP_938042: One amino acid conversion: 372nd N -> P |
| NM_198300.2 | 5792 | Mus musculus cytoplasmic polyadenylation element binding protein 3 (cpeb3), mRNA | NP_938042.2 | 716 | |
| AK147243.1 | 5660 | Mus musculus cDNA, cytoplasmic polyadenylation element binding protein 3, full insert sequence | BAE27791.1 | 716 | |
| AK161513.1 | 2097 | Mus musculus adult male testis cDNA, cytoplasmic polyadenylation element binding protein 3, full insert sequence | BAE36436.1 | 561 | 23-aa deletion; Early termination with conversion: VELA ->GEWK |
| BC128377.1 | 2142 | Mus musculus cytoplasmic polyadenylation element binding protein 3, mRNA, complete cds | AAI28378.1 | 477 | 216-aa truncation; a 23-aa deletion; |
| BC128378.1 | 465 | Mus musculus cDNA | - | Discontinued translation |