Table 4.
Open reading frames (ORFs) present on PGI-1 in strains 1609, UW551, Molk2 and GMI1000
| ORF | Size (AA)a | Gene/functionb | Nomenclature | |||
|---|---|---|---|---|---|---|
| IPO 1609 | UW551 | Molk2 | GMI1000c | |||
| 1 | 324 | Hypothetical protein | RSIPO_03304 | RRSL_02055 | Absent | RSc 0830 |
| 2 | 431 | Hypothetical protein | RSIPO_03303 | RRSL_02056 | Absent | Absent |
| 3 | 302 | Hypothetical protein | RSIPO_03302 | NA | Absent | Absent |
| 4 | 486 | RelA/SpoT domain protein | RSIPO_04909 | RRSL_02057 | Absent | Absent |
| 5 | 63 | Site specific integrase/recombinase | NA | RRSL_02058 | RSMK02625 | RSc 0890 |
| 6 | 49 | Bacteriophage related protein | NA | RRSL_02059 | RSMK02626 | Rsc 0891 |
| 7 | 316 | Drug metabolite transporter (DMT) protein | RSIPO_04908 | RRSL_02060 | RSMK02627 | Absent |
| 8 | 295 | Transcriptional regulator protein | RSIPO_03301 | RRSL_02061 | RSMK02628 | Absent |
| 9 | 58 | Hypothetical protein | RSIPO_03300 | NA | RSMK06220 | Absent |
| 10 | 519 | Hypothetical protein | RSIPO_03299 | RRSL_02063 | RSMK02629 | Absent |
| 11 | 133 | Hypothetical protein | RSIPO_04890 | RRSL_02064 | RSMK02632 | RSc 0834/0835 |
| 12 | 535 | Cellobiohydrolase | RSIPO_03298 | RRSL_02065 | RSMK02634 | RSp 0583 |
| 13 | 137 | Hypothetical protein | NA | RRSL_02066 | Absent | Absent |
NA not annotated
aSize of the ORF based on annotation according to strain 1609 or UW551
bGene function based on annotation for strains 1609, Molk2 or UW551
cORFs identified in strain GMI1000 after Blast-P of annotated ORFs for strains 1609 and UW551