Table 1.
Presence of mRNA (transcriptome) and peptides (proteome) from the four ATPase gene clusters present in the genome of K. stuttgartiensis.
| Genome |
Transcriptome |
Proteome |
|||||
|---|---|---|---|---|---|---|---|
| ORF | Putative ATPase subunit | aa | nt | # unique reads detected | Relative expression | # unique peptides detected | Gene coverage (%) |
| F-ATPase-1 | |||||||
| kuste3787 | I | 84 | 255 | 50 | 0.9 | ND | NA |
| kuste3788 | Unknown | 124 | 375 | 136 | 1.6 | ND | NA |
| kuste3789 | a | 257 | 774 | 656 | 3.7 | 2 | 25 |
| kuste3790 | c | 108 | 327 | 204 | 2.8 | ND | NA |
| kuste3791 | c | 90 | 273 | 317 | 5.1 | 1 | 25 |
| kuste3792 | b | 169 | 510 | 882 | 7.6 | ND | NA |
| kuste3792 | Delta | 182 | 549 | 1013 | 8.1 | ND | NA |
| kuste3793 | Alpha | 504 | 1515 | 1881 | 5.5 | 23 | 66 |
| kuste3794 | Gamma | 290 | 873 | 415 | 2.1 | 8 | 29 |
| kuste3795 | Beta | 471 | 1416 | 1956 | 6.1 | 24 | 60 |
| kuste3796 | Epsilon | 134 | 405 | 413 | 4.5 | 3 | 27 |
| F-ATPase-2 | |||||||
| kuste4592 | Beta | 462 | 1389 | 74 | 0.2 | ND | NA |
| kuste4593 | Epsilon | 130 | 393 | 16 | 0.2 | ND | NA |
| kuste4594 | I | 111 | 336 | 31 | 0.4 | ND | NA |
| kuste4595 | Unknown | 101 | 306 | 18 | 0.3 | ND | NA |
| kuste4596 | a | 236 | 711 | 68 | 0.4 | ND | NA |
| kuste4597 | c | 93 | 282 | 15 | 0.2 | ND | NA |
| kuste4598 | b | 255 | 768 | 21 | 0.1 | ND | NA |
| kuste4599 | Alpha | 513 | 1542 | 101 | 0.3 | ND | NA |
| kuste4600 | Gamma | 299 | 900 | 67 | 0.3 | ND | NA |
| F-ATPase-3 | |||||||
| kustc0572 | Beta | 454 | 1365 | 177 | 0.6 | ND | NA |
| kustc0573 | Epsilon | 134 | 405 | 12 | 0.1 | ND | NA |
| kustc0574 | I | 92 | 279 | 32 | 0.5 | ND | NA |
| kustc0575 | a | 221 | 666 | 39 | 0.3 | ND | NA |
| kustc0576 | c | 88 | 267 | 34 | 0.6 | ND | NA |
| kustc0577 | b | 246 | 741 | 35 | 0.2 | ND | NA |
| kustc0578 | Alpha | 498 | 1497 | 78 | 0.2 | ND | NA |
| kustc0579 | Gamma | 279 | 840 | 16 | 0.1 | ND | NA |
| V-ATPase-4 | |||||||
| kuste3864 | E | 210 | 633 | 99 | 0.7 | ND | NA |
| kuste3865 | Unknown | 180 | 543 | 74 | 0.6 | ND | NA |
| kuste3866 | A | 589 | 1770 | 531 | 1.3 | 1 | 2 |
| kuste3867 | B | 437 | 1314 | 503 | 1.7 | ND | NA |
| kuste3868 | Unknown | 99 | 300 | 36 | 0.5 | ND | NA |
| kuste3869 | D | 202 | 609 | 21 | 0.2 | ND | NA |
| kuste3870 | I | 583 | 1752 | 218 | 0.6 | ND | NA |
| kuste3871 | L | 152 | 459 | 66 | 0.6 | ND | NA |
ORF, open reading frame; aa, amino acids; nt, nucleotides; ND, not detected; NA, not applicable. The relative expression (transcriptome) is calculated as: [# unique reads detected * length of the reads (75 nt)/gene length (nt)]/coverage of the transcriptome (= 17). The gene coverage (proteome) is calculated as: (# unique peptides detected/# unique peptides predicted) * 100%.