TABLE 7.
Parameter | Value |
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---|---|---|---|---|---|---|---|---|---|
B. adolescentis ATCC 15703 |
B. longum subsp. longum |
B. longum subsp. infantis ATCC 15697 | B. dentium Bd1 |
B. animalis subsp. lactis |
|||||
DJO10A | NCC2705 | AD011 | Bl-04 | DSM 10140 | Bb-12 | ||||
Length (bp) | 2,089,645 | 2,375,792 | 2,256,640 | 2,832,748 | 2,636,367 | 1,933,695 | 1,938,709 | 1,938,483 | 1,942,198 |
Overall G+C content (%) | 59.18 | 60.15 | 60.12 | 59.86 | 58.94 | 60.49 | 60.48 | 60.48 | 60.48 |
No. of plasmids | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
No. of annotated genes | 1,631 | 1,990 | 1,727 | 2,416 | 2,129 | 1,528 | 1,567 | 1,566 | 1,642 |
Avg gene length (bp) | 1,109 | 1,031 | 1,115 | 997 | 1,066 | 1,070 | 1,064 | 1,062 | 1,063 |
Gene density (no. of genes/kb) | 0.780 | 0.838 | 0.765 | 0.852 | 0.807 | 0.790 | 0.808 | 0.807 | 0.845 |
Gene coding content (%) | 86.5 | 86.4 | 85.3 | 85.1 | 86.1 | 84.6 | 86.0 | 85.8 | 89.9 |
Gene G+C content (%) | 60.08 | 61.13 | 60.86 | 60.70 | 59.32 | 61.47 | 61.40 | 61.40 | 61.11 |
No. of rRNA gene operons | 5 | 4 | 4 | 4 | 4 (+ 1 5S rRNA gene) | 2 (+ 1 5S rRNA gene) | 4 | 4 | 4 |
No. of prophage-like elements | 0 | 1 | 1 (remnant) | 4 | 1 complete + 1 remnant | 1 (remnant) | 1 (remnant) | 1 (remnant) | 1 (remnant) |
No. of tRNAs | 54 | 58 | 57 | 79 | 55 | 52 | 52 | 52 | 52 |
No. of tRNA synthetases | 20 | 20 | 21 | 19 | 19 | 21 | 19 | 19 | 19 |
No. of MICs | 0 | 4 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
No. of CRISPRs | 1 (86 repeats) | 1 (43 repeats) | 0 | 0 | 2 (17 and 81 repeats) | 1 (20 repeats) | 1 (22 repeats) | 1 (20 repeats) | 1 (20 repeats) |
No. of oligonucleotide clustersa | 10 | 11 | 7 | 11 | 10 | 7 | 7 | 7 | 7 |
No. of polyol clustersb | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
Number of predicted oligosaccharide and other complex carbohydrate utilization gene clusters.
Number of predicted polyol utilization gene clusters.