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. 2010 Sep;74(3):378–416. doi: 10.1128/MMBR.00004-10

TABLE 7.

General characteristics of bifidobacterial genomes

Parameter Value
B. adolescentis ATCC 15703 B. longum subsp. longum
B. longum subsp. infantis ATCC 15697 B. dentium Bd1 B. animalis subsp. lactis
DJO10A NCC2705 AD011 Bl-04 DSM 10140 Bb-12
Length (bp) 2,089,645 2,375,792 2,256,640 2,832,748 2,636,367 1,933,695 1,938,709 1,938,483 1,942,198
Overall G+C content (%) 59.18 60.15 60.12 59.86 58.94 60.49 60.48 60.48 60.48
No. of plasmids 0 2 1 0 0 0 0 0 0
No. of annotated genes 1,631 1,990 1,727 2,416 2,129 1,528 1,567 1,566 1,642
Avg gene length (bp) 1,109 1,031 1,115 997 1,066 1,070 1,064 1,062 1,063
Gene density (no. of genes/kb) 0.780 0.838 0.765 0.852 0.807 0.790 0.808 0.807 0.845
Gene coding content (%) 86.5 86.4 85.3 85.1 86.1 84.6 86.0 85.8 89.9
Gene G+C content (%) 60.08 61.13 60.86 60.70 59.32 61.47 61.40 61.40 61.11
No. of rRNA gene operons 5 4 4 4 4 (+ 1 5S rRNA gene) 2 (+ 1 5S rRNA gene) 4 4 4
No. of prophage-like elements 0 1 1 (remnant) 4 1 complete + 1 remnant 1 (remnant) 1 (remnant) 1 (remnant) 1 (remnant)
No. of tRNAs 54 58 57 79 55 52 52 52 52
No. of tRNA synthetases 20 20 21 19 19 21 19 19 19
No. of MICs 0 4 3 0 0 0 0 0 0
No. of CRISPRs 1 (86 repeats) 1 (43 repeats) 0 0 2 (17 and 81 repeats) 1 (20 repeats) 1 (22 repeats) 1 (20 repeats) 1 (20 repeats)
No. of oligonucleotide clustersa 10 11 7 11 10 7 7 7 7
No. of polyol clustersb 1 1 0 0 1 0 0 0 0
a

Number of predicted oligosaccharide and other complex carbohydrate utilization gene clusters.

b

Number of predicted polyol utilization gene clusters.