TABLE 1.
Parameters | Description | Value | Units |
---|---|---|---|
α1 | Degradation rate of Pel proteina | 4.94 × 10−2 | h−1 |
α2 | Degradation rate of KdgR proteina | 3.47 × 10−2 | h−1 |
β2 | Maximum rate of synthesis of KdgRb | 7.00 × 10−2 | μm·h−1 |
Km | Michaelis-Menten constant for Pel·PGA complexa | 6.8 | mm |
Kd3 | Equilibrium dissociation constant for KdgR2·KDG2 complexc | 0.4 | mm |
kcat | Rate constant of the enzymatic Pel reactions in purified conditionsd | 6 × 104 | min−1 |
a The weight-characterized Michaelis-Menten constant KM = 1.2 g/liter has been measured in independent experiments as reported in this paper. From this value, one deduces the molar Michaelis-Menten constant Km = KM/P, where P is the molecular weight of the galacturonate (p = 176 Da) (30). For a theoretical discussion of the relation between KM and Km, see also supplemental material (Section 3).
b Using the estimate that the number of KdgR2 molecules measured during the growth phase is about 700 molecules/bacteria.
c Approximately 0.4 mm of KDG is required for a dissociation of 50% KdgR operator complexes (16). Let us note that the molecular weight of KDG (C6O6H10) is 178 Da, which is close to that of the galacturonate residue (176 Da).
d The kcat of the five major Pel enzymes were measured in purified conditions, as reported in Ref. 30.