Table VI. Performance of the best classifier of AtSubP on the complete Arabidopsis proteome retrieved from TAIR at various cutoff scores.
Subcellular Location | Predictions at Threshold |
||||||||||
>0.0 | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 1.0 | |
Chloroplast | 2,897 | 2,554 | 2,263 | 1,944 | 1,708 | 1,478 | 1,281 | 1,080 | 911 | 773 | 607 |
Cytoplasm | 2,650 | 2,496 | 2,326 | 2,174 | 2,042 | 1,883 | 1,727 | 1,557 | 1,414 | 1,253 | 1,046 |
Golgi apparatus | 359 | 337 | 312 | 287 | 264 | 250 | 218 | 192 | 164 | 139 | 83 |
Mitochondrion | 3,163 | 2,825 | 2,518 | 2,218 | 1,954 | 1,718 | 1,477 | 1,282 | 1,119 | 953 | 732 |
Extracellular | 2,572 | 2,383 | 2,177 | 1,976 | 1,767 | 1,619 | 1,473 | 1,333 | 1,205 | 1,082 | 883 |
Nucleus | 8,547 | 8,053 | 7,553 | 7,100 | 6,643 | 6,224 | 5,817 | 5,428 | 5,060 | 4,664 | 4,120 |
Cell membrane | 1,461 | 1,425 | 1,377 | 1,319 | 1,244 | 1,161 | 1,046 | 938 | 830 | 695 | 511 |
Total | 21,649 | 20,073 | 18,526 | 17,018 | 15,622 | 14,333 | 13,039 | 11,810 | 10,703 | 9,559 | 7,982 |