Table 4.

Most discriminative AFLPs according to a PCA using 229 AFLPs with presence/absence information, together with their map location, summed normalised loading and associated traits

Marker name	Chromosome	cM	Summed normalised loading	Associated trait based on map position (D’hoop et al. 2008)
E38_M60_175_67	1	23.4	0.94	Underwater weight, after cooking darkening, after baking darkening
E38_M60_359_93	1	24.1	0.94	Underwater weight, after cooking darkening, after baking darkening
E32_M49_305_19	1	24.9	0.96	Underwater weight, after cooking darkening, after baking darkening
E32_M48_194_28	1	24.9	0.94	Underwater weight, after cooking darkening, after baking darkening
E33_M55_163_15	1	24.9	0.94	Underwater weight, after cooking darkening, after baking darkening
P12_M41_104_62	1	24.9	0.85	Underwater weight, after cooking darkening, after baking darkening
E35_M54_521_76	1	24.9	0.80	Underwater weight, after cooking darkening, after baking darkening
E39_M49_180_51	1	45.5	0.93
E32_M61_156_96	4	25.9	0.83	After baking darkening, Chipping colour, Underwater weight
E35_M61_137_00	4	27.5	0.90	After baking darkening, chipping colour, underwater weight
E33_M36_082_76	4	27.5	0.88	After baking darkening, chipping colour, underwater weight
E32_M41_103_80	4	27.9	0.91	After baking darkening, chipping colour, underwater weight
E36_M50_321_99	5	35.6	0.91
E35_M49_099_89	5	36.4	0.93
E38_M60_346_17	5	36.4	0.92
E35_M61_090_09	5	36.4	0.92
E32_M51_409_76	5	36.4	0.89
E32_M49_232_09	5	36.4	0.88
E33_M55_300_18	5	36.4	0.88
E36_M42_290_28	5	37.2	0.87
E32_M48_204_62	7	54.5	0.73	After cooking darkening, after baking darkening
E35_M61_529_59	10	35.0	0.73
E36_M62_256_34	11	33.1	0.82
E36_M42_182_28	11	35.5	0.84
P12_M45_239_37	11	35.5	0.75
E39_M50_273_03	11	46.0	0.89