Table 5.

Harmony values obtained through the creation of confusion matrices

	Structure complete solution (%)	Structure 70% group membership restriction (%)	DARwin complete, intensities (%)	DARwin equidistant, intensities	DARwin equidistant, pres/abs
Structure complete solution
Structure 70% group membership restriction	100.00
DARwin complete, intensities	73.50	83.20
DARwin equidistant, intensities	65.40	72.80	64.93
DARwin equidistant, pres/abs	78.44	87.90	80.09	67.6% (58.50%)

A harmony value is obtained by dividing the number of matches by the total number of matches and mismatches. Both the complete and the 70% group membership solution of Structure have been compared with different ward trees as obtained with DARwin using different data sets and data types. The harmony value between brackets represents the correspondence between the two DARwin solutions when the complete Structure solution is used for calculation