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. 2009 May 5;25(13):1625–1631. doi: 10.1093/bioinformatics/btp296

Fig. 1.

Fig. 1.

In this score matrix, the thick lines represent SSE. If the first SSE on the first domain is matched to the first one on the second domain, and the same for the second SSEs, then the entries on diagonal segments shown have a higher likelihood than the other entries.