TABLE 1.
Description of our notation
Symbol or notation | Description |
---|---|
k | No. of haploid individuals used for separate sequencing |
λ | Expected no. of times a locus is read for an individual using separate sequencing |
n | Size of the pool in a pooling experiment |
J | Random no. of individuals for which reads are actually available at a particular locus with individual sequencing (J ≤ k) |
M | Random no. of reads for a particular locus in a pooling experiment [E(M) = kλ] |
p | Relative frequency of the allele of interest in the population |
F(P)(b, γ) | Poisson cumulative distribution function (![]() |
F(B)(x, M, p) | Binomial cumulative distribution function ![]() |
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Bias-corrected version of Tajima's π for a pooling experiment when the minor allele frequency is required to be at least b. For b = 1, ![]() |
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Bias-corrected version of Watterson's θ for a pooling experiment when the minor allele frequency is required to be at least b ≥ 1 |