TABLE 3.

QTL detected for DGY, GM, and SD in F₃ and LHRF-F₃ populations

Chr	Conventional F3						LHRF-F3
	Left marker	Pos (cM)	CI (cM)	LOD	R2	Add	Left marker	Pos (IcM)	CI (IcM)	LOD	R2	Add
DGY (ton ha−1)
1	bnlg1083	70	56–84	6.53	4.44	−1.411	Umc1397	226	218–240	4.23	3.51	−0.927
1	umc161	254	242–272	5.12	2.77	1.250	Umc161	728	716–754	5.4	5.11	1.021
2							gsy53b	88	40–168	3.43	2.25	0.882
2							Bnlg2248	208	190–220	3.81	2.73	−0.900
2	csu143	112	108–122	16.05	9.52	−2.327
2							phi127	462	448–476	6.69	8.43	−1.291
2	umc137	184	156–204	5.14	2.73	−1.381
4							Umc1511	200	174–226	6.08	6.04	−1.232
4	umc1101	212	186–230	4.16	5.88	−1.131	csu9b	476	448–506	4.46	3.20	−1.145
4							Umc1532	550	538–564	3.89	2.98	−0.868
5							Umc83b	314	296–324	3.43	3.59	−0.888
6							Bnlg249	126	108–138	6.59	9.10	−1.200
7	umc116	68	52–106	5.24	2.72	1.332
8	umc152	62	50–78	4.74	3.38	1.347
8	umc89	100	76–120	3.02	2.94	1.105
9							csu147	204	190–236	3.76	2.60	−0.939
10	umc1196	128	118–134	7.04	5.91	1.382
					48.4	/59.75					41.5	/56.85
GM (%)
2	umc134l	102	94–112	6.33	4.05	0.374
2	umc5a	126	114–144	3.2	2.55	−0.244
2	umc137	172	160–186	7.07	4.30	−0.289
3	umc1892	22	0–72	2.93	2.00	0.21	bnl13.05b	176	166–188	3.67	3.22	−0.252
3	umc1767	158	148–180	4.59	3.42	−0.238
4	gsy4	68	62–76	19.66	18.02	−0.51	Mmc0471	154	142–188	5.98	8.94	−0.308
5	umc2115	76	58–100	2.72	1.6	−0.171
5							bnl7.71	330	314–350	3.54	4.29	−0.228
6	bnlg1702	130	118–144	4.59	2.92	−0.213
8							Bnlg1031	370	330–392	3.77	2.69	−0.254
9	phi027	56	46–66	6.62	5.23	−0.280
9							bnl5.09	378	370–386	3.66	4.67	−0.230
					45.5	/55.49					20.6	/24.82
SD (days)
1	umc1166	48	28–62	6.49	5.58	0.391
1	umc84	282	268–292	6.45	4.76	0.366	Bnlg2123	814	800–836	3.33	5.18	0.287
3	umc1892	22	6–46	3.71	2.82	0.328
3							dupssr23	270	240–286	3.36	3.43	0.307
5	mmc0261	90	82–110	4.37	3.43	0.314	Umc43	250	240–260	8.25	9.63	0.559
5							Umc1110	324	312–340	4.79	5.05	−0.385
6	gsy189	20	8–36	3.19	2.67	−0.243
6	umc62	178	156–196	2.84	2.42	−0.246
8	umc152	64	40–86	3.51	2.88	0.324
8	umc89	96	90–104	10.95	7.30	0.56
8	umc1384	180	136–190	4.53	3.59	−0.300
9	phi027	56	48–64	6.47	6.28	−0.376
9	umc1137	200	180–208	3.55	2.60	0.261	Umc1137	472	456–492	4.72	5.07	0.376
10	umc44	102	86–136	5.27	3.88	0.315
					45.7	/54.40					26	/30.23

For each detected QTL are indicated the chromosome (Chr), the left marker flanking the QTL (left marker), the estimated position (Pos) on the linkage map of the population, the 95% confidence interval of the QTL position (CI), the LOD score, the percentage of phenotypic variance explained by the QTL (R²), and the additive effect (associated with F252 allele). is the proportion of phenotypic variance/genotypic variance explained by all the detected QTL for a given trait. QTL showing significant digenic epistasis (P < 0.01) are underlined. QTL involved in epistatic interaction with two different QTL are double underlined.