TABLE 1.
Strain information from a variety of phylogenetic groups
| Clade | Tree length | Species/strain name | Abbreviation | Accession |
|---|---|---|---|---|
| B1 | 0.366 | Bacillus anthracis str. Ames | Ba | NC_003997 |
| B. cereus ATCC 10987 | Bc1 | NC_003909 | ||
| B. cereus ATCC 14579 | Bc2 | NC_004722 | ||
| B. weihenstephanensis | Bw | NC_010184 | ||
| B. cereus subsp. cytotoxis | Bc3 | NC_009674 | ||
| B2 | 1.981 | B. amyloliquefaciens | Bam | NC_009725 |
| B. subtilis | Bs | NC_000964 | ||
| B. licheniformis ATCC 14580 | Bl | NC_006322 | ||
| B. pumilus | Bp | NC_009848 | ||
| Geobacillus kaustophilus | Gk | NC_006510 | ||
| B3 | 3.274 | B. halodurans | Bh | NC_002570 |
| B. clausii | Bcl | NC_006582 | ||
| Oceanobacillus iheyensis | Oi | NC_004193 | ||
| Exiguobacterium sibiricum | Es | NC_010556 | ||
| Anoxybacillus flavithermus | Af | NC_011567 | ||
| C1 | 0.055 | Clostridium botulinum A str. Hall | Cbo1 | NC_009698 |
| C. botulinum A2 str. Kyoto | Cbo2 | NC_012563 | ||
| C. botulinum B1 str. Okra | Cbo3 | NC_010516 | ||
| C. botulinum Ba4 str. 657 | Cbo4 | NC_012658 | ||
| C. botulinum A3 str. Loch Maree | Cbo5 | NC_010520 | ||
| C2 | 1.415 | C. botulinum B str. Eklund 17B | Cbo6 | NC_010674 |
| C. botulinum E3 str. Alaska E43 | Cbo7 | NC_010723 | ||
| C. beijerinckii NCIMB 8052 | Cbe | NC_009617 | ||
| C. perfringens SM101 | Cpe | NC_008262 | ||
| C. acetobutylicum ATCC 824 | Cac | NC_003030 | ||
| C3 | 2.958 | C. novyi NT | Cno | NC_008593 |
| C. tetani E88 | Cte | NC_004557 | ||
| C. difficile 630 | Cdi | NC_009089 | ||
| C. phytofermentans ISDg | Cph | NC_010001 | ||
| C. thermocellum ATCC 27405 | Cth | NC_009012 | ||
| E1 | 0.039 | Shigella boydii Sb227 | Sbo | NC_007613 |
| S. sonnei Ss046 | Sso | NC_007384 | ||
| Escherichia coli E24377A | Eco1 | NC_009801 | ||
| S. flexneri 5 str. 8401 | Sfl | NC_008258 | ||
| S. dysenteriae Sd197 | Sdy | NC_007606 | ||
| E2 | 0.044 | E. coli 536 | Eco2 | NC_008253 |
| E. coli ED1a | Eco3 | NC_011745 | ||
| E. coli APEC 01 | Eco4 | NC_008563 | ||
| E. coli O127:H6 str. E2348/69 | Eco5 | NC_011601 | ||
| E. coli IAI39 | Eco6 | NC_011750 | ||
| E3 | 0.387 | E. coli IAI1 | Eco7 | NC_011741 |
| E. coli HS | Eco8 | NC_009800 | ||
| E. coli S88 | Eco9 | NC_011742 | ||
| E. fergusonii ATCC 35469 | Efe | NC_011740 | ||
| Salmonella enterica subsp. arizonae serovar 62:z4,z23 | Sen | NC_010067 | ||
| P1 | 0.312 | Pseudomonas putida F1 | Ppu1 | NC_009512 |
| P. putida KT2440 | Ppu2 | NC_002947 | ||
| P. putida GB-1 | Ppu3 | NC_010322 | ||
| P. putida W619 | Ppu4 | NC_010501 | ||
| P. entomophila L48 | Pen | NC_008027 | ||
| P2 | 0.885 | P. fluorescens Pf0-1 | Pfl1 | NC_007492 |
| P. fluorescens SBW25 | Pfl2 | NC_012660 | ||
| P. fluorescens Pf-5 | Pfl3 | NC_004129 | ||
| P. syringae pv. phaseolicola 1448A | Psy1 | NC_005773 | ||
| P. mendocina ymp | Pme | NC_009439 | ||
| P3 | 1.118 | P. putida KT2440 | Ppu2 | NC_002947 |
| P. syringae pv. tomato str. DC3000 | Psy2 | NC_004578 | ||
| P. mendocina ymp | Pme | NC_009439 | ||
| P. stutzeri A1501 | Pst | NC_009434 | ||
| P. aeruginosa PA7 | Pae | NC_009656 |