Table 2.
Pathway analysis of nitrosoproteins in human umbilical vein endothelial cells: potential functionality
| Biological functions | -log (P value)a | S-NO-proteins identified |
|---|---|---|
| Cell viability/apoptosis | 7.854–5.246 | ACTBb, APRTb, ANXA1b, ANXA5, ATP5Hb, EEF2b, EIF5Ab, ENO1b, FUBP1, GAPDHb, GSTP1b, HNRNPC, HSP90AA1, HSPA5, HSPB1, LGALS3b, NME1b, NPb, P4HB, PARK7b, PCNA, PPIAb, PRDX2b, PRDX6b, SND1, STMN1b, THBS1, TPT1b |
| Cellular assembly and organization | 4.216–1.325 | ACTBb, ANXA1b, ANXA2b, ANXA5, CFL1b, GAPDHb, LGALS3b, VIMb, SEC13b, NME1b, STMN1b, PRDX6b, HSP90B1, NPb, PRDX2b, HSP90AA1, HSPB1, THBS1 |
| Cellular function and maintenance | 4.152–1.457 | NME1b, THBS1, ANXA1b, VIMb, HSP90AA1, HSP90B1, HSPA5, HSPB1 |
| Molecular transport | 3.921–1.304 | ANXA1b, HSP90AA1, PRDX6b, STMN1b, THBS1, PARK7b, APRTb, LGALS3b, TPT1b, NME1b, NPb, GSTO1b, GAPDHb, ANXA5, PRDX2b |
| Protein synthesis | 3.347–1.544 | HSP90B1, HSPA5, PARK7b, PRDX6b, HSP90AA1, P4HB, ANXA2b, PARK7b, PPIAb, NME1b, THBS1, EIF5Ab, HSPB1, EEF2b, KRT7b, PSMB3b, UBCb |
| Small molecule biochemistry | 3.347–1.325 | ANXA1b, TKTb, PRDX6b, ANXA2b, EIF6, THBS1, STMN1b, GSTP1b, APRTb, PCNA, P4HB, NME1b, PARK7b, PPIAb, PRDX2b, ANAX5, NPb, TPT1b, GSTO1b, GAPDHb |
| Cell cycle | 2.492–1.386 | THBS1, VIMb, FUBP1, PCNA, STMN1b, PPIAb, NME1b, GSTP1b, HSPB1, PRDX6b, KRT7b |
| Metabolism | 2.492–1.325 | TKTb, PRDX6b, THBS1, GSTO1b, ANXA5, ANXA2b, ENO1b, PKM2, GAPDHb, ANXA1b, PRDX6b, GSTP1b, THBS1, PRDX2b, STMN1b, NME1b, HSPA5, GSTO1b, P4HB, APRTb, PCNA, NME1b, NPb, TPT1b |
| Cardiovascular system development and function | 2.294–1.420 | THBS1, LGALS3b, PRDX6b, TPT1b, TKTb, VIMb, ANXA1b, ANXA5 |
| Gene expression | 2.191–1.355 | SND1, PCNA, FUBP1, ENO1b, LGALS3b |
| Cell signaling | 2.191–1.325 | HSPA5, STMN1b, NPb, PRDXb, THBS1, NME1b, HSPB1, PPIAb |
| Antigen presentation | 2.156–1.420 | LGALS3b, ANXA1b, THBS1, ANXA2b, HSP90B1 |
The significance value associated with Functional Analysis for a dataset is a measure of the likelihood that the association between a set of molecules and a given process or pathway is due to random chance. The smaller the P value the less likely that the association is random and the more significant the association is. In general, P values less than 0.05 [-log (P) > 1.3] indicates statistically significant, nonrandom association. The P value is calculated using the right-tailed Fisher Exact test.
Proteins that nitrosylation was significantly altered by E2.