Table 1. Data collection and refinement statistics.
SeMet proteinOne manganese | DPBA-boundTwo manganese | Open loopOne manganese | |
Space Group | P6122 | P6122 | P6122 |
Cell dimensions (Å) | a = b = 124.53c = 295.20α = β = 90° γ = 120° | a = b = 124.61c = 294.74α = β = 90° γ = 120° | a = b = 124.20c = 294.32α = β = 90° γ = 120° |
Resolution range (last shell) (Å) | 50−2.1 (2.18−2.10) | 50−2.20 (2.28−2.20) | 50−2.2 (2.3−2.2) |
Beamline | ESRF ID29 | ESRF ID29 | ESRF ID29 |
Wavelength (Å) | 0.9790 | 0.9763 | 0.9537 |
Detector | ADSC Quantum Q315r | ADSC Quantum Q315r | ADSC Quantum Q315r |
Completeness (last shell) (%) | 100 (100) | 100 (100) | 95.4 (95.7) |
R-sym (last shell) | 9.4 (68.1) | 8.4 (59.2) | 8.0 (59.4) |
I/σI (last shell) | 13.46 (2.52) | 23.4 (5.1) | 23.5 (4.2) |
No. of reflections used (free reflections) | 76324 (3174) | 66523 (2787) | 62367 (3290) |
R-factor (last shell) | - | 0.188 (0.232) | 0.192 (0.262) |
R-free (last shell) | - | 0.221 (0.285) | 0.224 (0.297) |
Total atoms in structure | - | 6736 | 6681 |
Protein atoms | - | 6227 | 6212 |
Ligand atoms | - | 8xMn++, 4xDPDA (56) | 4 Mn++ |
Water molecules | - | 445 | 465 |
Average B-value (Å2) | - | 26.1 | 25.8 |
Ramachandran plot favoured regions | - | 98.7 | 98.9 |
Ramachandran plot allowed regions | - | 100 | 99.9 |
Bond distance deviations from ideal (Å) | - | 0.018 | 0.018 |
Angles deviations from ideal (°) | - | 1.56 | 1.55 |