Table 3.
Top hits from published asthma GWAS and association to BMI and asthma in CAMP
Position | Nearby gene(s) | SNP | Original p-value | Population | Children included | Ref | Association in CAMP | |
---|---|---|---|---|---|---|---|---|
p-value BMI* | p-value asthma† | |||||||
1q31 | DENND1B/CRB1 | rs2786098 | 9 × 10−11 | Caucasian | Yes | 26 | 0.14 | 0.96 |
2q12 | IL1RL1/IL18R1 | rs1420101 | 6 × 10−12 | Caucasian, East Asian | Yes | 21 | 0.81 | 0.23 |
2q12.3 | DPP10 | rs1435879 | 3 × 10−6 | African ancestry | Yes | 25 | 0.72 | 0.18 |
3p12 | ROBO1/GBE1 | rs275358 | 4 × 10−6 | Caucasian | Yes | 26 | 0.10 | 0.54 |
5q12 | PDE4D | rs1588265 | 4 × 10−7 | Caucasian | Yes | 23 | 0.28 | 4 × 10−7 |
5q22 | WDR36/TSLP | rs2416257 | 1 × 10−4 | Caucasian, East Asian | Yes | 21 | 0.27 | 0.82 |
5q33 | ADRA1B | rs10515807 | 4 × 10−6 | African ancestry | Yes | 25 | 0.99 | NA |
6q23 | MYB | rs9494145 | 4 × 10−3 | Caucasian, East Asian | Yes | 21 | 0.21 | 0.79 |
6q27 | PDE10A | rs1358786‡ | 8 × 10−8 | Caucasian | Yes | 26 | 0.75 | 0.57 |
9q21.31 | TLE4 | rs2378383 | 7 × 10−7 | Hispanic/Mexican | Yes | 22 | 0.38 | 0.59 |
9p23 | PTPRD | rs1326772 | 8 × 10−7 | Caucasian | Yes | 26 | 0.57 | 0.54 |
9q24 | IL33 | rs3939286 | 5 × 10−6 | Caucasian, East Asian | Yes | 21 | 0.07 | 0.26 |
17q21 | ORMDL3/GSDML | rs7216389 | 9 × 10−11 | Caucasian | Yes | 24 | 0.81 | 0.002 |
20q12 | PRNP | rs6052761 | 2 × 10−6 | African ancestry | Yes | 25 | 0.64 | 0.82 |
Linear regression in asthmatics using PLINK.
Case-control association using PLINK.
Not genotyped in CAMP. Association to a proxy SNP, rs1033700 (r2 = 0.86 with rs1358786) was reported.
NA = not available (excluded after QC).