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. 2010 Sep 17;5(9):e12836. doi: 10.1371/journal.pone.0012836

Table 3. Interactions observed between protein and RNA and within RNA.

Residue/Base* or Base/Base* Between atoms Bond type Distance (Å)
Lys14/G0 NZ/2′-OH Hydrogen bond 3.3/3.2
Leu17/G0 O/N2 Hydrogen bond 3.0/2.9
Asn18/A1 O/N1 Hydrogen bond 2.9/2.7
Asn18/G0 OD/2′OH Hydrogen bond 2.6/2.7
Leu20/G0 O/N2 Hydrogen bond 2.4/2.5
Phe25/G0 Aromatic ring Aromatic stacking -
Pro152/A1 Pro152 ring and A1 ribose Van der Waals 3.6/3.7
G2/G8 O6/N2 Hydrogen bond 2.7
G2/G8 N7/N1 Hydrogen bond 2.9
G2/A4′ O2/N1 Hydrogen bond 3.3
A4/U7′ N6/O4 Hydrogen bond 2.4
*

Interactions between the MTase and the RNA octamer. Also listed the intramolecular RNA interactions. Primed numbers indicate residues related by the 2-fold ncs axis.