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. Author manuscript; available in PMC: 2010 Sep 20.
Published in final edited form as: Proceedings (IEEE Int Conf Bioinformatics Biomed). 2007 Nov 2;2007:339–348. doi: 10.1109/BIBM.2007.55

Fig. 3.

Fig. 3

Screenshots of BioPAX modeling user interface prototype. (a) Phosphorylation of Cyclin A:Cdk2 complexes by Wee1 as displayed by Reactome. (b) A compact representation: only species and reactions are shown in the form compliant with the VCell GUI. (c) An extended view, where a user gains an understanding that both complexes contain the same components Cyclin_A and Cdk2; Cdk2 is a protein, which participates in one of these complexes in phosphorylated form. (d) The model exported into VCell, kinetic parameters and rate constants added within VCell framework.