TABLE 2.
Prediction of N-myristyolation in 19 plant copines
Ninteen proteins were identified as plant copines by querying the whole protein database with BON1 with the NCBI Blast program. Shown are their protein IDs, sequences of their N terminus, the species, and the predicted probability of N-myristoylation. The abbreviations used are: At: Arabidopsis thaliana; Vv: Vitis vinifera, Rc: Ricinus communis; Pt: Populus trichocarpa; Ps: Picea sitchensis; Mt: Medicago truncatula; Os: Oryza sativa; Zm: Zea mays; Sb: Sorghum bicolor. No: no modification predicted. Low, medium, and high: modification predicted with low, medium, and high confidence.
| Protein ID | Sequences | Species | Prediction |
|---|---|---|---|
| AAK98797 | MGNCCS- - -DVASGAGATAGVGGS | At (BON1) | Low |
| NP_568180 | MGSCWS- - -DGSYAGGGMVGVGGG | At (BON2) | No |
| XP_002280913 | MGNCCS- - -DDGGGRSAVGGTSAS | Vv | Low |
| XP_002511086 | MGNCCS- - -DEAGGRAAVGGTLAA | Rc | Low |
| XP_002318175 | MGNCFS- - -DVAGGRAAVGGSAAA | Pt | High |
| XP_002321753 | MGNCCS- - -DVAGGRAAVGGSGAA | Pt | Low |
| XP_002267420 | MGGCFS- - -DVRGGKQAVGVGLTG | Vv | Low |
| XP_002268132 | MGGCFS- - -DVRGGKQAVGVGLTG | Vv | Low |
| XP_002266991 | MGGCFS- - -DVRGGKQAVGVGLTG | Vv | Low |
| ABR16493 | MGCCFS- - -DIAGGQQAVGGTGVN | Ps | Medium |
| XP_002512304 | MGGCVSG- -DVKGGKQAIGGAQQR | Rc | Medium |
| ABN08161 | MGSCFS- - -DLKGAKQAVGGVNAQ | Mt | Medium |
| XP_002319577 | MGLCFS- - -DVRGGKQAIGGTSQQ | Pt | No |
| NP_172362 | MGGCLSG- -DVKGGKQAIGGVQQR | At (BON3) | High |
| NP_001046976 | MGNCCS- - -DEMGGGGGHAGRHSV | Os | High |
| CAO49680 | MGGCFS- - -DVRGGKQAVGVGLTG | Vv | Low |
| NP_001147038 | MGNCCS- - -DEVSHAGAHPVGSAT | Zm | High |
| XP_002439702 | MGGCFSLDGDVRGGMEAVGGGVTA | Sb | High |
| CAN68494 | MGGCFS- - -DVRGGKQAVGVGLTG | Vv | Low |
| CAN74634 | MGGCFS- - -DVRGGKQAVGVGLTG | Vv | Low |