Table 1. SNPs within the NEMP genes that included significant association with time to AIDS-1987 CDC definition [30].

gene	entrez	chr	score	rs	pos	loc	MAF	No. SNPs	test	model	OR/RH	p unadjusted	pGT	pST
PECI	10455	6	90.5	rs629362	4066830	intron	0.31	15	DCA	A	1.7	6.52×10−6	0.04	0.39
				rs853416	4058046	−2880 5′	0.32	15	DCA	A	1.6	3.25×10−5	0.18	1
				rs633290	4059787	−1139 5′	0.31	15	DCA	A	1.6	1.66×10−5	0.09	1
				rs584585	4063788	intron	0.31	15	DCA	A	1.6	1.00×10−5	0.05	0.60
				rs659025	4064050	intron	0.31	15	DCA	A	1.6	6.12×10−5	0.33	1
				rs7744628	4064995	intron	0.31	15	DCA	A	1.6	2.15×10−5	0.12	1
				rs9503922	4066332	intron	0.26	15	DCA	A	1.6	9.52×10−5	0.52	1
				rs659305	4070654	intron	0.31	15	DCA	A	1.6	1.96×10−5	0.11	1
				rs660560	4070940	intron	0.31	15	DCA	A	1.6	2.15×10−5	0.12	1
				rs661404	4071096	intron	0.40	15	DCA	A	1.5	6.40×10−5	0.35	0.35
ACSM4	341392	12	75	rs7961991	7371395	intron	0.16	4	PH	R	Und	3.59×10−6	0.02	0.22
				rs7137120	7346864	−1331 5′	0.16	4	PH	R	Und	8.84×10−6	0.05	0.53

Results are from proportional hazards (PH) models or dichotomous categorical analyses (DCA). Chr = chromosome. Score is the haplotype coverage generated by Tagger with the number of SNPs shown for that gene (SNPs) [29]. Pos =  the position from HapMap Project, and build 36. loc =  location relative to the gene. MAF =  Minor allele frequency. R = recessive genetic Model, A = additive genetic model. RH = relative hazard. If the analysis was a DCA, or categorical test, this equates to the Odds Ratio (OR). Und = undefined, which means that there were no cases that succumbed to disease and therefore the value is not statistical calculable. p _GT is the p-value corrected for 904 genes and six tests. p _ST is the p-value corrected for the number of SNPs and the six tests (see methods).