Table 2.
The 20 most represented (InterPro) protein domains inferred from peptides conceptually translated from individual contigs for Oesophagostomum dentatum [combined assembly of data for adult female, adult male, and the third (L3) and fourth (L4) larval stages] and InterPro protein domains (level 1) assigned to predicted peptides unique to each stage or sex following in silico subtraction
| InterPro description | InterPro code | Number of predicted peptides (%) |
|---|---|---|
| Combined assembly (31 982)a | ||
| SCP-like extracellular | IPR014044 | 377 (1.2) |
| NAD(P)-binding domain | IPR016040 | 365 (1.1) |
| Proteinase inhibitor I2, Kunitz metazoa | IPR002223 | 339 (1) |
| Zinc finger, LIM-type | IPR001781 | 332 (1) |
| WD40 repeat | IPR001680 | 312 (0.9) |
| Ankyrin | IPR002110 | 257 (0.8) |
| EF-HAND 2 | IPR018249 | 247 (0.7) |
| WD40 repeat, subgroup | IPR019781 | 242 (0.7) |
| Allergen V5/Tpx-1 related | IPR001283 | 236 (0.7) |
| Protein kinase-like | IPR011009 | 220 (0.6) |
| RNA recognition motif, RNP-1 | IPR000504 | 216 (0.6) |
| WD40 repeat 2 | IPR019782 | 215 (0.6) |
| Protease inhibitor I4, serpin | IPR000215 | 207 (0.6) |
| Src homology-3 domain | IPR001452 | 201 (0.6) |
| Peptidase C1A, papain C-terminal | IPR000668 | 194 (0.6) |
| C-type lectin | IPR001304 | 183 (0.5) |
| Kelch repeat type 1 | IPR006652 | 183 (0.5) |
| Annexin repeat | IPR018502 | 183 (0.5) |
| Protein kinase, core | IPR000719 | 172 (0.5) |
| EF-HAND 1 | IPR018247 | 168 (0.5) |
| Female (139)a | ||
| Chitin binding protein, peritrophin-A | IPR002557 | 18 (8.6) |
| Basic-leucine zipper (bZIP) transcription factor | IPR004827 | 10 (4.8) |
| DNA primase, small subunit | IPR002755 | 6 (2.9) |
| p53-like transcription factor, DNA-binding | IPR008967 | 5 (2.4) |
| DNA-binding HORMA | IPR003511 | 4 (2) |
| Acyl-CoA dehydrogenase/oxidase | IPR013786 | 3 (1.4) |
| Frizzled-like domain | IPR020067 | 3 (1.4) |
| Lipid transport protein | IPR001747 | 3 (1.4) |
| PreATP-grasp-like fold | IPR016185 | 3 (1.4) |
| UbiA prenyltransferase | IPR000537 | 3 (1.4) |
| Male (243)a | ||
| PapD-like | IPR008962 | 16 (4) |
| Major sperm protein | IPR000535 | 15 (3.7) |
| C-type lectin | IPR018378 | 6 (1.5) |
| Phosphoenolpyruvate carboxykinase | IPR008209 | 6 (1.5) |
| Protein of unknown function DUF236 | IPR004296 | 6 (1.5) |
| Scramblase | IPR005552 | 6 (1.5) |
| ClpX, ATPase regulatory subunit | IPR004487 | 5 (1.3) |
| Galactose oxidase/kelch | IPR011043 | 5 (1.3) |
| Ribosomal protein S2 | IPR001865 | 5 (1.3) |
| Amidinotransferase | IPR003198 | 4 (1) |
| L3 (220)a | ||
| RmlC-like jelly roll fold | IPR014710 | 17 (4.5) |
| Six-bladed beta-propeller, TolB-like | IPR011042 | 10 (2.7) |
| Protein of unknown function DUF590 | IPR007632 | 9 (2.4) |
| 7TM GPCR, serpentine receptor class r (Str), Nematode | IPR019428 | 8 (2.1) |
| Acyltransferase ChoActase/COT/CPT | IPR000542 | 7 (1.9) |
| Putative DNA binding | IPR009061 | 7 (1.9) |
| 7TM GPCR, serpentine receptor class e (Sre), Nematode | IPR004151 | 6 (1.6) |
| Nuclear hormone receptor, ligand-binding, core | IPR000536 | 6 (1.6) |
| Coenzyme A transferase | IPR004165 | 5 (1.3) |
| Ion transport | IPR005821 | 5 (1.3) |
| L4 (249)a | ||
| Peptidase M24, methionine aminopeptidase | IPR001714 | 7 (2.2) |
| FAD-binding, type 2 | IPR016166 | 4 (1.3) |
| Oxysterol-binding protein | IPR000648 | 4 (1.3) |
| Translation protein SH3-like | IPR008991 | 4 (1.3) |
| Tubulin/FtsZ, GTPase domain | IPR003008 | 4 (1.3) |
| 6-phosphogluconate dehydrogenase | IPR008927 | 3 (1) |
| Peptidase C13, legumain | IPR001096 | 3 (1) |
| Aminoacyl-tRNA synthetase | IPR015413 | 3 (1) |
| Adenosylcobalamin biosynthesis, ATP | IPR016030 | 3 (1) |
| Aspartate/other aminotransferase | IPR000796 | 2 (0.6) |
aNumber of unique InterPro domains assigned to predicted peptides in each data set