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. Author manuscript; available in PMC: 2010 Sep 22.
Published in final edited form as: Appl Bioinformatics. 2002;1(2):81–92.

Figure 3.

Figure 3

Relationship of doppelgänger trees to focus tree of interest. The shadowy thin grey doppelgänger trees are identical in structure but evolve independently of the focus tree. This is equivalent to being connected to the focus tree by a branch with infinite length. In the bold black focus tree, only reconstruction of the short grey innermost branch was considered.