Table 1.
Overlap summary among two prior reports that extracted biomarker sets from microarray mRNA profiling of breast cancer tissue from patients, and the top-ranked ChIP-X study identified by ChEA
| Experiment | Targets | Targets | P-values | |
|---|---|---|---|---|
| input | (database) | |||
| Van't Veer et al. (2002) | E2F1-18555785 | 35 | 4172 | 2.56E-07 |
| CREB1-15753290 | 15 | 957 | 1.15E-06 | |
| CUX1-19635798 | 27 | 3052 | 3.54E-06 | |
| SMAD2/3-18955504 | 20 | 1936 | 9.50E-06 | |
| Wang et al. (2005) | ZFP281-18757296 | 16 | 2004 | 7.72E-06 |
| HNF4A-19822575 | 29 | 6083 | 2.20E-05 | |
| SMAD2/3-18955504 | 15 | 1936 | 2.23E-05 | |
| Combined | SMAD2/3-18955504 | 35 | 1936 | 9.30E-10 |
| ZFP281-18757296 | 32 | 2004 | 9.58E-08 | |
| E2F1-18555785 | 50 | 4172 | 1.17E-07 |
Complete tables are provided at Supplementary Tables S1–S4.