TABLE 2.
Zinc coordination distances
Zn atom | Atom or molecule | Zn distancea (Å) for: |
|||
---|---|---|---|---|---|
Native BJP-1, subunit: |
NBSA-BJP-1 complex, subunit: |
||||
A | B | A | B | ||
Zn1 | His-116 Nɛ | 2.06 | 2.08 | 2.03 | 2.04 |
His-118 Nδ | 2.08 | 2.11 | 2.06 | 2.05 | |
His-196 Nɛ | 2.03 | 1.97 | 2.04 | 2.06 | |
OHbr | 1.94 | 1.98 | |||
N NBSAb | 1.83 | 1.94 | |||
O NBSA | 2.86 | 2.87 | |||
Water | 3.25 | 3.22 | 3.14 | 3.38 | |
Zn2 | 3.45 | 3.43 | 3.42 | 3.44 | |
Zn2 | Asp-120 Oδ2 | 2.06 | 2.09 | 2.02 | 2.01 |
His-121 Nɛ | 2.07 | 2.08 | 2.04 | 2.05 | |
His-263 Nɛ | 2.05 | 2.09 | 2.04 | 2.05 | |
OHbr | 2.06 | 1.96 | |||
N NBSA | 1.92 | 1.86 | |||
O NBSA | 3.28 | 3.24 | |||
Water | 2.53 | 2.45 | 2.78 | 3.05 | |
Zn3 | Glu-176 Oɛ2 | 2.00 | 1.96 | 2.04 | 2.03 |
His-190 Nδ | 2.06 | 2.10 | 2.02 | 2.02 | |
Lys-250 Nζ | 1.98 | 2.00 | 2.00 | 1.97 | |
Lys-321 O (symmetrical) | 1.99 | 2.03 | 2.06 | 2.01 |
Estimated SD on distances were below 0.06 and 0.04 Å for the native and complex structures, respectively. τ = (β − α)/60, where α and β are the basal diagonal angles at Zn with β > α(1); (β = Asp-120 Oδ1-Zn-Water angle; α = His-263 Nɛ-Zn-OHbr angle, in this case). τ for subunit A = 0.29; τ for subunit B = 0.30.
The N atom of NBSA replaces the OHbr atom in the NBSA-BJP-1 complex bridging the two Zn ions.