Table 1. Top 25 ranks and total nucleotide counts of the leaf-cutter ant fungus garden metagenome as phylogenetically binned using the complete microbial genome collection and PhymmBL.
| Genus | Taxonomic Group | Metagenome vs. Genome Collection (nucleotide) | Metagenome vs. Genome Collection (protein) | PhymmBL |
| Pantoea | γ-proteobacteria | 1 (535,392) | 1 (473,904) | 1 (619,953) |
| Klebsiella | γ -proteobacteria | 2 (286,032) | 2 (199,941) | 3 (335,333) |
| Bradyrhizobium | α-proteobacteria | 3 (109,462) | 5 (128,838) | 11 (110,268) |
| Serratia | γ -proteobacteria | 4 (81,025) | 11 (66,510) | 53 (22,643) |
| Methylobacterium | α-proteobacteria | 5 (71,411) | 7 (86,100) | 5(229,988) |
| Rhodopseudomonas | α-proteobacteria | 6 (70,871) | 17 (52,119) | 17 (78,968) |
| Streptomyces | Actinobacteria | 7 (69,344) | 13 (59,562) | 21 (67,358) |
| Pseudomonas | γ -proteobacteria | 8 (63,984) | 8 (87,396) | 10 (118,354) |
| Burkholderia | β-proteobacteria | 9 (65,098) | 12 (66,453) | 2 (417,279) |
| Enterobacter | γ -proteobacteria | 10 (72,117) | 9 (81,630) | 33 (37,067) |
| Anaeromyxobacter | δ-proteobacteria | 11 (54,832) | 16 (55,095) | 41 (31,470) |
| Solibacter | Acidobacteria | 12 (47,848) | 3 (237,534) | - |
| Erwinia | γ -proteobacteria | 13 (39,935) | 14 (58,392) | 20 (67,526) |
| Mycobacterium | Actinobacteria | 14 (42,108) | 15 (51,360) | 9 (125,575) |
| Rhizobium | α-proteobacteria | 15 (36,392) | 25 (37,599) | 6 (191,857) |
| Salmonella | γ -proteobacteria | 16 (35,192) | 22 (39,477) | 14 (85,169) |
| Escherichia | γ -proteobacteria | 17 (52,529) | 14 (58,392) | 4 (250,623) |
| Frankia | Actinobacteria | 18 (34,092) | 23 (42,075) | 59 (21,300) |
| Acidobacterium | Acidobacteria | 19 (32,107) | 4 (146,133) | 95 (11,575) |
| Ralstonia | β-proteobacteria | 20 (30,259) | 20 (44,067) | 7 (133,715) |
| Saccharopolyspora | Actinobacteria | 21 (29,082) | 58 (16,947) | 110 (8,578) |
| Roseiflexus | Chloroflexi | 22 (29,067) | 10 (77,787) | 183 (2,811) |
| Sorangium | δ-proteobacteria | 23 (27,235) | 18 (52,308) | 29 (46,538) |
| Gluconobacter | α-proteobacteria | 24 (26,348) | 27 (35,670) | 31 (26,501) |
| Rhodococcus | Actinobacteria | 25 (22,675) | 34 (35,640) | 12 (105,948) |