Table 3.

Assembly statistics and misassembly rate for the Velvet de novo assembly and STM method applied to the Danio rerio simulated data set

Gasterosteus aculeatus (stickleback) proteome was used as reference for the STM method.

(No. of contigs) Number of contigs/scaffolds >100 bp; (Max length) length of the longest contig/scaffold; (Total length) summed length of all contigs/scaffolds; (No. of errors) number of misassemblies (and percent of misassemblies relative to the total number of contigs); (Percent of STM errors) percent of errors associated with the STM method excluding errors due to the de novo assembler.