Table 6.
Prevalence of target 16S rRNA genes detected for each quantitative real-time polymerase chain reaction assay
qPCR assay | All (n = 44) | BMI < 251 (n = 17) | BMI > 25 (n = 22) | P2 |
Bifidobacterium catenulatum/Pseudocatenulatum | 12 | 3 | 7 | 0.315 |
Bifidobacterium spp. | 44 | 17 | 22 | ND |
Clostridium coccoides/Eubacterium rectale-group | 44 | 17 | 22 | ND |
Clostridium cocleatum 88% | 33 | 13 | 15 | 0.568 |
Collinsella aerofaciens-like | 29 | 15 | 12 | 0.024 |
Coprococcus eutactus 97% | 16 | 7 | 8 | 0.759 |
Desulfovibrio desulfuricans-group | 29 | 11 | 15 | 0.819 |
Eubacterial 16S | 44 | 17 | 22 | ND |
Lactobacillus-group | 44 | 17 | 22 | ND |
Ruminococcus torques 91% | 38 | 15 | 18 | 0.582 |
Ruminococcus torques 94% | 29 | 9 | 16 | 0.202 |
Streptococcus bovi-like | 33 | 11 | 18 | 0.225 |
Veillonella spp. | 41 | 16 | 20 | 0.709 |
Body mass index (BMI) data missing for 5 subjects;
Calculated with pearson χ2 test. ND: Not determined; qPCR: Quantitative real-time polymerase chain reaction.