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. Author manuscript; available in PMC: 2011 Sep 29.
Published in final edited form as: J Am Chem Soc. 2010 Sep 29;132(38):13170–13171. doi: 10.1021/ja1061399

Figure 2.

Figure 2

A) Time traces of Relbow from 7 explicit-solvent simulations. B) Mean-squared displacement ΔRelbow2(τ) as a function of time delay τ. DElbow waṣestimated by the slope between 10 and 20 ns. Inset shows ΔRelbow2(τ) for τ=0–30 ns. C) 300 ns trajectory, displayed at 1 ns intervals. Inset shows subset at 5 ps intervals. D) Dispersion and relaxations were calculates from the residuals of linear fit (slopes in Table 1), ΔRelbow. E) Autocorrelation function of ΔRelbow fitted to sum of 2 exponentials (SI). DElbow was calculated from the average decay time <τ>. F) Accommodation rate ka and attempt frequency Ca, for DElbow=1.1µs2/s, versus the free-energy barrier height. Range of experimentally-determined rates shaded in blue.