Table 3. Corrected distances between avian hepadnaviruses calculated on the region corresponding to group 1 eZHBVs (see Figure 1).
eZHBVc | eZHBVd | eZHBVe | eZHBVh | eZHBVi | eZHBVf | eZHBVg | Crane | Heron | Ross's Goose | Snow Goose | White Stork | |
eZHBVd | 0.63 | |||||||||||
eZHBVe | 0.55 | 0.52 | ||||||||||
eZHBVh | 0.28 | 0.27 | 0.13 | |||||||||
eZHBVi | 2.45 | 2.05 | — | 1.07 | ||||||||
eZHBVf | 0.61 | 0.36 | 0.21 | 0.32 | 2.07 | |||||||
eZHBVg | 0.30 | 0.21 | 0.23 | 0.14 | — | 0.10 | ||||||
Crane | 1.04 | 1.13 | 1.46 | 0.57 | 1.13 | 0.95 | 0.62 | |||||
Heron | 1.01 | 1.42 | 1.61 | 0.79 | 1.89 | 1.13 | 0.76 | 0.42 | ||||
Ross's goose | 1.02 | 1.30 | 1.37 | 0.76 | 0.95 | 0.96 | 0.54 | 0.18 | 0.37 | |||
Snow goose | 1.03 | 1.16 | 1.55 | 0.70 | 1.00 | 1.10 | 0.71 | 0.17 | 0.39 | 0.20 | ||
White stork | 0.95 | 1.28 | 1.69 | 0.68 | 1.30 | 1.00 | 0.77 | 0.32 | 0.20 | 0.32 | 0.35 | |
Duck | 1.09 | 1.34 | 1.11 | 0.66 | 1.20 | 1.07 | 0.61 | 0.18 | 0.40 | 0.16 | 0.09 | 0.32 |
Distances were calculated using the TPM2uf+G model under maximum likelihood settings (see Materials and Methods) in PAUP [65]. Values in bold correspond to distances between eZHBVs that are larger than 0.7. This distance threshold corresponds to twice the average distance between extant avian hepadnaviruses (2×0.27 = 0.54) plus 0.16, which corresponds to a conservatively high estimate of the distance accumulated at the bird genome rate after integration (see Materials and Methods).