Table 3. TNFSF13B variants tested in the Aust/NZ and Norwegian study populations.
| SNP | Chr. Post. (bp)* | Function | Aust/NZ study population | Norwegian study population | |||||
| Allele (frequency) | MGp | QTDTp | Allele (frequency) | MGp | |||||
| SNP_A-1967C | 107718278 | pp | Failed genotyping assay | Not tested | |||||
| rs16972194 | 107718962 | pp | G (0.993) | A (0.007) | 0.380 | 0.015 | G (0.997) | A (0.003) | 0.421 |
| rs9514828 | 107719374 | pp | G (0.566) | A (0.434) | 0.406 | 0.915 | Not tested | ||
| rs36206504 | 107719569 | pp | A (0.965) | C (0.035) | 0.714 | 0.162 | Not tested | ||
| rs36206505 | 107719584 | pp | A (0.931) | G (0.069) | 0.125 | 0.618 | Not tested | ||
| rs16972197 | 107719892 | pp | G (0.993) | C (0.007) | 0.380 | 0.015 | G (0.997) | C (0.003) | 0.357 |
| rs56124946 | 107720644 | Intron 1 | C (0.993) | G (0.007) | 0.380 | 0.015 | C (0.991) | G (0.009) | 0.737 |
| SNP_A17071G | 107737282 | Intron 3 | Failed assay design | Not tested | |||||
| rs33926705 | 107757082∧107757083 | Intron 5 | Not tested | Not tested | |||||
| rs61972017 | 107757114 | Intron 5 | A (0.988) | C (0.012) | 1.000 | 0.197 | Not tested | ||
Novel SNPs are denoted SNP_[UCSC reference template allele][bp position from TSS][alternative allele]. Alleles reported are orientated on the TOP strand (ftp://ftp.ncbi.nih.gov/snp/database/Illumina_top_bot_strand.note.txt). * ref_assembly, human genome build 36.3, Abbreviations: TSS; translation start site, Chr.; chromosome, Post.; position, bp; base pair, MGp; measured genotype test p-value, QTDTp; quantitative transmission disequilibrium test p-value, pp; proximal promoter.