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. 2010 Sep 30;6(9):e1001146. doi: 10.1371/journal.pgen.1001146

Table 4. The single nucleotide polymorphisms (SNPs) predictive of the subjects with 15% lowest and highest IMT changes from 2001 to 2007.

SNP ID* (rs number) Gene symbol (HGNC name) SNP location (Chr region) Significance (p-value) Predictive power (%AUC)
rs2073658 USF1 1q23.3 0.70 9.40
rs9479055 C6orf97 6qs25.1 0.40 8.55
rs17672135 FMN2 1q43 0.41 8.55
rs9687339 MAST4 5q12.3 0.93 7.69
rs1042713 ADRB2 5q33.1 0.48 7.69
rs2301880 WNK1 12p13.33 1.00 6.84
rs3130340 INTERGENIC 6p21.32 0.11 6.84
rs2476601 PTPN22 1p13.2 0.44 5.13
rs11898505 SPTBN1 2p16.2 0.27 5.13
rs3798220 LPA 6q25.3 1.00 5.13
rs10172036 ICOS 2q33.2 0.52 5.13
rs2820037 INTERGENIC 1q43 0.66 4.27
rs2234693 ESR1 6q25.1 0.74 3.42
rs1800896 IL10 1q32.1 0.71 3.42
rs17222814 ALOX5AP 13q12.3 0.89 3.42
rs1801274 FCGR2A 1q23.3 0.75 2.56
rs854560 PON1 7q21.3 0.81 1.71
rs10246939 TAS2R38 7q34 0.80 1.71
rs9594738 INTERGENIC 13q14.11 0.58 1.71
rs1799983 NOS3 7q36.1 0.06 0.855
rs1256049 ESR2 14q23.2 0.46 0.855

*The SNPs identified also in the previous case-control association studies [9][21] are boldfaced.

†The corrected p-values larger than one were truncated to unity.

‡The SNPs are arranged according to their contribution to the overall prediction accuracy (AUC).