Table 6.
Results of QuantiSNP analysis of CNV in II-3, III-4 and III-6
| Sample ID | Chr | Start (bp) | End (bp) | Length (bp) | Start (rsID) | End (rsID) | No. SNPs | Copy number | Log Bayes Factor |
|---|---|---|---|---|---|---|---|---|---|
| II-3 | 2 | 89772948 | 89932893 | 159945 | rs2847840 | rs842164 | 3 | 1 | 4.9518 |
| III-4 | 2 | 89772948 | 89932893 | 159945 | rs2847840 | rs842164 | 3 | 1 | 11.2343 |
| II-3 | 3 | 89489946 | 89499754 | 9808 | rs9842599 | rs870898 | 2 | 1 | 9.11556 |
| III-6 | 3 | 89489946 | 89499754 | 9808 | rs9842599 | rs870898 | 2 | 1 | 10.1035 |
| II-3 | 12 | 31101381 | 31298174 | 196793 | rs244496 | rs1025624 | 22 | 3 | 17.1712 |
| III-6 | 12 | 31157554 | 31298174 | 140620 | rs4931434 | rs1025624 | 19 | 3 | 12.4023 |
| III-4 | 12 | 31157554 | 31298174 | 140620 | rs4931434 | rs1025624 | 19 | 3 | 16.9481 |
| II-3 | 12 | 36528296 | 36667312 | 139016 | rs12306932 | rs12368819 | 4 | 4 | 5.04966 |
| III-6 | 12 | 36528296 | 36667312 | 139016 | rs12306932 | rs12368819 | 4 | 4 | 5.47972 |
| III-4 | 12 | 36528296 | 36633905 | 105609 | rs12306932 | rs8186746 | 3 | 3 | 3.46073 |
| II-3 | 13 | 22300993 | 22381716 | 80723 | rs2335347 | rs1887263 | 16 | 1 | 90.072 |
| III-6 | 13 | 22320522 | 22381716 | 61194 | rs11616753 | rs1887263 | 15 | 1 | 63.7887 |
| III-4 | 13 | 22294326 | 22381716 | 87390 | rs1330919 | rs1887263 | 17 | 1 | 87.5565 |
| III-6 | 22 | 20654301 | 20892316 | 238015 | rs732466 | rs2330040 | 52 | 3 | 68.3679 |
| III-4 | 22 | 20654301 | 20887622 | 233321 | rs732466 | rs5750720 | 51 | 3 | 82.1348 |
CNVs listed which occurred in two or more family members. Position, length, size (bp and number of SNPs involved) and type of CNV listed, as well as log-Bayes factor. A copy number of 1 indicates the deletion of one allele, and 3 or 4 the duplication of one or both alleles.